Salvelinus namaycush (lake trout): 120031537
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Entry
120031537 CDS
T07522
Name
(RefSeq) endoribonuclease ZC3H12A-like
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120031537
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
120031537
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
120031537
NCBI-ProteinID:
XP_038833265
UniProt:
A0A8U0PY53
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Position
Sna37:complement(6733645..6747851)
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AA seq
667 aa
AA seq
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MDQAFPSLQTPVTGPFEPNPGELQLRVDFFRKLGYSPMEVRAALLKLGLSTDTNSVLGEL
VRSEASTSTSNSTIPESGDNTTGPTSHTGSSMASSRTHGPQRDRPVPSLEDRKDTDSGLK
PIVIDGSNVAMSHGNKQVFSCRGIELAVIYFLDRGHSTVIVFVPSWRKEQPRPDVPITDQ
HILMELEKKKIVVFTPSRRVGGKRVVCYDDRFIVKHAYESDGVIVSNDTYRDLQGERPEW
KRCIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKKPLLPEHKRQLCPYGKKCTYGV
KCKFYHPERTHQSHSSLADELREKARLSSAKEDRNPMMSQLRGHQSDPGSFPSYSLENDL
EHRLTLEPRGSLREGPKSQVTENMLLYWDGLRSSRNQQARSPTAVGQGQMDWPSMLSPST
TTDLPYASISHECLDSGFGSYESQSQYSDVSQGHSKAFRSRQQQQQGFPSGSRHPGMHPE
SLAQDSPQPCRCFHLAPSSGPQQQHHSNPHLESHSQSQPRYDTYSPPLFPPNMHHYSLPC
NFQQDGVGAHHFHPHQHPQKYWSDPFHGGVPQARASCSLPPGPHLHQPPTPHGAPHSSYR
DQQEHDSWAQPPPPSAFDTEREELRKKLQAIFNPHQVDTVMGMFPHLMDAQKLAAEILNL
KSQRGAF
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaccaggcctttcccagcctccagaccccagtcactggtccgtttgaacccaaccca
ggagagctccagctcagggtggacttcttcagaaagttgggctactcccccatggaggtt
cgggccgccctgcttaagctaggcctgagtacagacaccaactctgtactgggggagctg
gtccgcagtgaagccagcactagtacttctaactcaaccatccctgagagtggtgacaat
actactggccccacaagccacacaggctccagcatggcctcctctaggacccatggcccc
cagagagacagaccagtcccatcactggaagacaggaaggacacagacagtggactgaaa
cctatcgttattgacggcagcaatgtggccatgagtcatggtaacaaacaagtgttctcc
tgtaggggaattgagttggcagtgatctatttcctggatagaggtcactcaaccgtcatt
gtgtttgtgccctcatggcgcaaggagcagcccaggcctgatgtccccatcacagaccaa
cacattctaatggagctggagaagaagaagatcgttgtcttcactccctcgagacgcgtc
ggtggtaaacgggtggtctgctacgacgaccgttttattgtgaagcatgcctacgagtcg
gacggcgtgatcgtgtccaacgacacctatagggacctgcagggagagcgtccggagtgg
aagcgctgtatcgaggagaggctgcttatgtactctttcgtcaatgacaaattcatgccc
ccagatgacccgcttggccgtcatggtcccagtctggagaacttccttaggaagaagcct
ctactaccagaacacaagcgccaactctgtccttatggtaaaaaatgcacctacggtgta
aagtgtaagttctaccaccctgagcgcactcaccaatcccactcctcgttggctgacgag
ctaagggagaaggcaaggctctcctcggcaaaagaggaccggaatcccatgatgtcacag
ctgaggggccaccagtccgacccgggatcctttccctcctattctctggagaatgacctg
gagcacaggctgacgttagagccccgcggttccctgagggagggtcccaagagccaggta
actgagaacatgttgctatactgggatgggttgcgctccagtaggaaccagcaggcccgc
agccccacagcagtaggccaaggacagatggactggcccagtatgctctccccatccact
actactgacctcccctatgccagcatctcccatgagtgcctggactctggttttggctcc
tatgagagccagagccagtactcggatgtgtcccaaggccacagcaaggccttcaggtcc
aggcagcagcaacagcagggcttcccctctggttccagacatccaggcatgcatccagag
agtctggcccaggacagcccccagccctgcaggtgtttccatttggctccctcctcgggt
ccccagcagcagcaccacagcaacccacacctcgagtcccactcccaatcccagccgagg
tatgacacctactcgcctcctctgttcccacccaacatgcaccactacagcctcccctgc
aacttccagcaagatggggtgggggcacaccatttccacccccatcagcacccccagaag
tactggtcagaccccttccatggcggggtcccccaggctagggcgtcctgtagcctcccc
cccggcccccacctccatcagccccctaccccgcatggagccccccactcatcttacagg
gatcagcaggaacacgactcctgggcccagccacctccaccttctgcctttgacacagag
agagaggagctccgtaagaaactgcaggccatcttcaacccccaccaggtggatacggtc
atgggaatgttccctcacctgatggatgcccagaagctggctgcagagatcctcaacctc
aaatctcagagaggtgccttctga
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