Salvelinus namaycush (lake trout): 120031698
Help
Entry
120031698 CDS
T07522
Name
(RefSeq) collagen alpha-6(VI) chain-like isoform X1
KO
K06238
collagen type VI alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04518
Integrin signaling
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120031698
04518 Integrin signaling
120031698
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120031698
09142 Cell motility
04820 Cytoskeleton in muscle cells
120031698
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120031698
00536 Glycosaminoglycan binding proteins [BR:
snh00536
]
120031698
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
120031698
Glycosaminoglycan binding proteins [BR:
snh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120031698
Hyaluronan
Extracellular matrix or blood plasma proteins
120031698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
VWA_CoxE
Kunitz_BPTI
vWA_SIBA-E
Integrin_beta
Motif
Other DBs
NCBI-GeneID:
120031698
NCBI-ProteinID:
XP_038833422
UniProt:
A0A8U0PZX2
LinkDB
All DBs
Position
Sna37:28412747..28449827
Genome browser
AA seq
2729 aa
AA seq
DB search
MEGTQGLLAIFTIATCLLVNGAQKTVCKEEAVADIVFLVDGSWSIGSENFKQIRQFLYTL
VNSFDVAPDHVRIGLVQYSNTPRTEFLLNTFQDKQDILQYINNLRYMGGETNTGLGLDFL
LNELFVDRAGSRVNENVPQIAVVITDGESMDNVGLHALKLKKQGVTLYAIGIKEADEDQL
KEIATTPHNQHVYSVSDFAALQGISQSLIQVLCTTVDEAKRPISKVVQECLNATVADIVF
LVDGSTSISPTNFQEVRKFLHSFIEGLDIGADKVRVGLAQFSNEIQKQFHLGEHTDQRAL
LEQVDRLPQLGGGTATGKAITVLREEFFTKANGSRADQRVPQIAVVLTDGESADDVELPA
KALRKQGVIVFAIGVGAANINELKDIANRPHKHFLVNIESFQALQTLSQGLLQTVCVSME
NQRMALIPKFSDIFFLVDSNMMQADFQLVRTLLMRLVNQLNPSTKTMRLGLAQFAQDTKV
EFLLNTHNTKEEYLAALRKFRLPLRPNRSRHLGDALEYARAHFFTTASGGRNEQGYRQFL
VTVTGGDSKDNVMKVARTIKSEGTTIVSIGLGESTLPELKLMATSPFFYQTTPIASVLKT
VFETEEVVTVTDDCSEASLADIVFIVDESSSNRTANFQLVRGFIHKIVDGLDMDFNRVRV
GIVLYSNKASAQVYLNSFQDKTNILQFIKILPYRRGLTYTGEALEYAREKMFIKERGSRK
EQGVQQVAIVITGKSQDNVTSHAAALRRAGVTVYAVGIKDADENELRQIASDPPNKHVLH
VDSFAKLKTLEKSLKKSVCYNILKKAVKDNARTYTAKQSCLQTDEADMFFLIDHSGSIEY
PDFADMKTFIKEFIHTFHIGPHHVRVGVVKFNDTPALEFDLTTYPDKPSVEKAVDGIIQI
GGGTYTGLALTSMGPHFDRAKATRSNKVREYLIVITDGGSQDNVKDQAAKLRAQGITIYA
IGVNLANDTQLLEIAGSQEKKFFVNNFDALKPIKNDIITDICSPDICKDMKGDVLFLIDS
SGSINNPDFQKMKVFMQSIINKSDIGLDKVHVGIIQFSTSQQVIFPLNKHNDKEGMLQDL
QTMQQIGGGTLTGEALSYTSQFFDPPKGGRTNVKQFLIVVTDGEAQDEVTSAAKKLQDKR
VIIYAIGVVNANNTQLLEISGAQERVYSERDFDALKALDSQLALAICDPERECVRTEIAD
IIFLVDGSTSISSDNFDIMKNFMMSVVNETSVGEKQTRYGLIVFSDDPESKFTLNEYKSK
RDVNSAITKLREPSGDTYTGKALKYSLGYFGAQYGGRKALNVPQWLMVITDGEATDPYSL
AGPAKELRDNGIIVYSIGVDGANKQELELMAGDTNKVFFVDDFHELDTLHKNISFEFCQT
SKPVCEKTQGDLVLLIDSSGSISTTDFTIMKKFATDLVSSFNIAEQYFRVGVAQFSSDPK
KEFFLNEYYTEAEVDNQINNMMQIRYTTNIGKALDYVRTEYFQPARGSRINAKVSQNLVV
ITDGRSDDYVVHAAEELKAMNIEVFAIGIGKDHKPVELGQITLNPERVFSVQDFASLDKI
KKKVVDTICSSKVPATPAGCTIDIAMGFDITRRATAQGLFDGQAQLQAFLPQIIRYVSNL
KGLCCVAGDGSIETNIGFLVVEQNGKVLYDYNFEKYDEKIVEKVMALQTSQTTYFNSFLL
HSFRDKFQESNAGVKVLVIFSDGLDDDVMKLEQESELLRTKGKGINALLTVALEGVQNAN
LLQMVEFGRGFGYKQPLNIGMHNLGNTLLTQIDTVAERECCNVMCKCTGHEGIRGNRGRP
GTKSQTGLKGHPGFPGEEGGIGERGPPGPTGPPGLQGCPGRRGLKGSRGYRGDRGDDGDH
GLDGVDGEQGLIGTAGSAGERGNPGRPGNSGLIGEPGVKGQRGLRGDPGDSGVDSVVAGP
KGGRGNPGLPGDPGEEGSRAESGIVGNPGPQGRRGLPGLNGTPGDPGDVGLQGIPGPSGP
QGIRGDLGQPGPRGLQGLPGPQGTPGTMGGKGSTGRRGMNGQKGQPGDPGDNGALGTHGP
RGMPGLDGSDGHGPPGPQGMKGEPGFHGYPGLQGESGDFGVKGGPGPKGNRGRGGNSGRS
GESGDPGSIGPLGHTGSRGRPGERAMSECQLTTYIRDNCACSQGQAACPAYPTELVFALD
MSQDVEPATFERMRSALLSILDDVAIAESNCPTGARVAVVSYSADTKYLIRFQDYQHKQE
LLEAIQNVALERTSNQRHLGEAMRFVGRHVFKRTRKALTMRKVAVFFTNGPSVDSAAIVT
AAMEFKALNIAPAVIAMRNSPDVQRAFEADDTGSFILVRLVDRSQDQNAVLTRIKNCVIC
YDHCKPAQECDFTDAQRPLVVDMDLTLVVDGSREIRADQYAGIQELLGSVVKQVAWSPKP
SVADGRARVALLQTSGSLLPQTSQAVKVEFDLQKYHNHIGLQTHLRSMQQQGGVSSLGQT
LEYALSKVFLKATRPRKSRVVLAVVGAKTAHWDQAKLASISQKAKCQGVSLFVIAVGDHY
NSTQVEELASTPSGQHLLHLWHVKEWERGYAQRFFRAFLRVLSKGMNSYPPAHLKLKCEL
ILGQEHGQGQGQAEWEEWKEEEEEYTDEEEFLEHTGVFPTQIALDQVDTIHAFSRGDGAT
SPPRPQPNSNDHTTLLRTEESTVLNQDACFFKQDKGGCDNYTLKWYFDTTQSECSRFWYG
GCGGNGNRFETQETCEGLCLRRNSTHLKP
NT seq
8190 nt
NT seq
+upstream
nt +downstream
nt
atggaagggacacagggcctcctggccatcttcaccatagctacatgtcttctggttaac
ggagcacaaaaaacagtctgcaaggaagaggccgtggccgacatcgtcttcctggtggac
ggttcatggagcatcggctcagagaacttcaaacagattcgccagttcttgtacacgctg
gtcaacagctttgacgtggcccccgaccatgtgcgcatcgggctggtccagtacagcaac
acgccgcgcaccgagttcctcctcaacaccttccaggacaaacaggacatcctgcagtac
attaacaacctgcgttatatgggcggtgaaaccaacacgggcctgggcctggacttcctg
ctgaacgagctctttgttgaccgcgcagggagccgggtgaatgagaacgtgccccagatc
gccgtggtgatcactgacggtgaatcaatggacaatgtggggctgcatgcccttaagctg
aagaagcagggcgtcacgctgtacgccatcgggatcaaagaagcagacgaagatcagctg
aaggagattgccactacacctcacaaccagcacgtgtacagcgtgtcggactttgctgcg
ctgcaggggatctcccagagcctcatccaggtgctgtgtactactgtagatgaggcaaag
agaccaatatccaaagtggtacaagagtgcctcaacgccacagtggctgacattgtgttc
cttgtggatggctccaccagcatcagcccaacaaacttccaggaggttcggaagtttctc
cacagcttcatcgaggggctggatatcggagcggacaaggttcgcgtaggactggcccag
ttcagtaatgagatccagaagcaattccatttgggggaacatacggaccaaagggcccta
ctggagcaagtggacaggcttccacagctcgggggaggcacagccaccggcaaagccatt
actgtccttcgggaagagtttttcaccaaggccaacgggagccgcgctgatcagagggtg
cctcagattgctgtggtgctcaccgacggggagtctgcggacgacgtagagctgccagcc
aaggcgctaaggaagcaaggggtcattgtgtttgctattggagttggggcagccaacatc
aacgagctgaaggatatcgctaacaggccccacaagcatttcctggtcaacatagaaagt
ttccaggccctacaaacactttctcagggtctgctgcagactgtctgtgtctccatggag
aaccagaggatggctctaatcccaaagttctctgatatcttcttcctggtggacagcaat
atgatgcaggcagacttccagctggtcagaacccttctgatgcgactggtcaaccagctc
aacccgagcactaaaacgatgcgtctgggtctggcccagtttgctcaggacaccaaggtg
gagttcttactgaacacccacaacaccaaggaagagtacttggcagctctcaggaaattc
aggctgccgctgcgtcccaacaggtctcgtcacctgggcgatgccctggaatacgcccgt
gcacacttcttcactacagcgtctggtggccgtaatgaacaaggctaccggcagtttcta
gtcacggtgacagggggggattcgaaggataacgtgatgaaggtggcacgtactatcaaa
tctgaagggacaaccattgtgtctatcgggttgggtgaatctacacttccagagctaaag
ttaatggccacctcgccattcttttaccagactacacccatcgcctctgtgctaaagact
gtctttgagactgaagaggtggtcactgtgactgacgattgcagtgaagcttcactggct
gacattgtgtttatagttgatgagtcttcgagcaatagaactgcaaacttccagctggtt
cgtggattcatccacaagatagtggacggcctagatatggacttcaacagggtgagggtg
ggcattgtcctctatagcaacaaggcctcggcccaggtctacctcaactccttccaagat
aaaacaaatatccttcagttcatcaagatcctgccctaccgtcgcggtctcacatacact
ggcgaggccctggagtatgccagggagaagatgtttatcaaggagaggggcagccggaaa
gaacagggggtgcagcaggtggcgatagtcatcaccggaaagtcccaggacaacgtaact
tctcatgccgctgcactgcgcagagctggtgtcactgtctacgcagtggggatcaaggat
gctgacgagaacgagctgagacagattgcttcagatccccctaacaagcacgtattgcat
gtggacagctttgccaagctcaagaccctggagaagagcctgaagaagagcgtgtgctac
aacatcctgaaaaaagcagtcaaagacaacgcaaggacatacactgccaagcaaagctgt
ttgcagacagatgaagcagacatgttcttcctgatcgaccactcagggagtattgaatat
ccagactttgctgacatgaagacatttattaaagaattcatacacacattccacatcgga
ccgcatcatgtccgcgtgggtgtggtaaagttcaatgatacaccagctcttgagtttgat
ttgacaacctaccctgacaaaccttcagtggagaaagcagtggatggtatcatccaaatt
ggaggcgggacatataccggattagcgctgacctctatgggtccccactttgatcgggct
aaggccacccgtagtaacaaagttcgcgagtacctcattgtcatcacagacggagggtct
caagacaacgtgaaggatcaagcagcaaagctgagggcgcagggcatcaccatatatgcc
attggggtgaatctagctaacgatacacagctgctggagattgctggcagccaagagaag
aagttctttgtcaacaactttgacgctctgaaaccaataaaaaatgacatcatcacagat
atctgctcccctgatatttgcaaggacatgaagggggacgtcctcttcttgatcgacagc
tcaggtagtatcaacaacccagacttccagaagatgaaggtcttcatgcaatccatcatc
aacaaatctgacataggcctggataaagtgcacgtgggcatcatacagttcagcaccagc
caacaggtgatcttccctctcaacaagcataacgataaggaaggtatgttgcaggattta
caaacgatgcaacagataggcgggggcacactcaccggcgaagccctgtcctatacctcg
cagttctttgacccaccgaaaggagggcgcactaacgtgaagcagttcctgattgtcgta
accgatggtgaggcacaggatgaggtaacgtctgctgccaagaaacttcaagacaagcgt
gtgatcatctacgctattggggtggtcaatgccaacaatacacagttactggagatcagt
ggcgcacaggagagggtctactccgagagggactttgatgcactcaaggctttggatagc
caactggcattggcaatctgtgatccggagagagagtgtgtgaggacggagatcgcagac
attattttcttggtggacggctccaccagcatcagctcagataattttgacataatgaaa
aacttcatgatgtccgtggtcaatgaaacctctgttggggagaagcagacacgctatggt
ctgattgtcttttcagacgaccccgagtctaaattcacactcaacgaatacaaatctaag
agagacgtcaatagtgccatcacaaagcttagagagcccagtggagacacctacactggc
aaggcactcaagtattccttgggttattttggtgcacagtacggcgggcgaaaggcccta
aatgttccccagtggttgatggtgatcacagatggtgaggctactgacccctatagccta
gctgggccagccaaggagctacgggacaatgggatcatagtatatagcatcggagtggat
ggagcaaataagcaagagcttgagctcatggcaggggacacgaataaggttttctttgtg
gatgacttccatgaactagacacactgcacaaaaatatttcctttgaattctgccaaacc
agcaaaccagtctgtgaaaaaacgcagggggatctggtcttgttgattgacagctcaggg
agcatcagcaccaccgacttcactatcatgaagaagtttgccacagaccttgtttccagc
ttcaacattgcagagcagtacttccgggtgggagtcgcccagttcagcagtgatcctaaa
aaggagttcttcttgaatgagtattacacagaagcagaggtggacaaccagataaacaat
atgatgcagattaggtacacaacaaacatcggaaaggccctggactacgtccgtacagag
tacttccaaccagctagagggagccgtatcaatgccaaggtctctcagaacctggttgtg
atcactgacggacgttcagatgattatgttgtgcatgcagcagaggagctcaaggccatg
aacattgaggtgtttgccatcggtatagggaaagaccacaaacctgtcgagcttgggcaa
atcactctcaacccggaaagggtcttctctgtgcaggactttgccagcctggacaagatc
aagaagaaggtggtggatactatatgctcctccaaggtaccagccactccagcgggctgc
accatagacatcgccatggggttcgatattacacgcagggccaccgcccaggggctcttc
gatggccaagcccagctacaggccttcctgccacagattatccgctatgtgtccaacctg
aagggcctgtgttgcgtggcgggagatggttccattgagactaacattggcttcctcgtg
gtggagcagaacggaaaggttctctacgactacaacttcgagaagtacgacgagaaaatt
gtggagaaggttatggccctgcagacctcccagacaacatacttcaactccttcctcctg
cactccttccgcgataagttccaggaatctaatgctggtgtgaaggtgctggtgatcttc
tcagacggactcgatgatgacgtgatgaaactggagcaagagtcagaacttctccgcact
aaaggaaaaggtatcaacgccctgcttacagtcgccttagaaggggtccaaaatgccaac
cttcttcagatggtggagtttgggcgaggattcggctacaagcagccgctcaacattggc
atgcacaatttgggaaacaccctgttgacacaaatagacacagtggctgagagggagtgc
tgcaatgtgatgtgtaagtgcaccggacatgagggtatccgtggcaacagaggacgccca
ggcacaaagagtcagacaggactgaaaggacaccctggcttccctggcgaggagggggga
attggcgagagaggtccaccaggtcccactggcccaccgggactacagggctgtcctggg
aggagaggcctcaagggctcaagaggctacagaggggacaggggtgatgatggagaccat
ggccttgatggggttgacggtgaacagggtctgattggaacagctggatctgcaggagag
agaggaaacccaggaagaccaggcaacagcggcctcataggagagccaggagtgaagggg
cagcgtggacttagaggtgaccctggagactctggagtggacagcgttgtcgcgggtccc
aaaggaggaaggggaaacccaggactaccgggagacccaggagaagagggcagtcgagca
gaaagtggaatcgtcggaaacccaggtcctcaaggaagaagaggtctccctggtctaaat
ggaacaccaggggatccaggagatgtaggcctccaaggaattcctggcccttctggacca
cagggtataagaggagacttgggccagcccggacccaggggcctgcagggtttacctgga
cctcagggcacacctggaactatgggtggcaaaggatcaacaggaagacgagggatgaat
ggacagaagggccaacctggggaccccggagacaacggagcgcttggaacacatgggcca
agagggatgccgggtcttgatggcagtgacggccatggacctcccggaccccagggaatg
aagggagagcctggtttccatggttaccctggattacagggtgaaagtggtgattttgga
gtcaaaggaggtccaggccccaaaggaaaccgaggcagaggggggaactcgggcagatcg
ggtgagtcaggagatcccggatccattggaccactgggacacactggctctagaggcaga
ccaggagagagagccatgtctgaatgccagctgaccacctatatccgtgataactgtgca
tgctctcaaggccaggcagcgtgcccagcctaccccacagagctggtctttgctctggat
atgtcacaggatgtggagcctgccacgttcgagaggatgcgctccgctctcctctccata
ttggacgacgttgccatcgccgagagcaactgcccgacgggtgcacgtgttgccgtggta
tcctatagtgccgacaccaagtacctgatccgattccaggactaccaacacaagcaggag
ttgttggaggccatccaaaacgttgcactggaacgaacgtccaaccagcgccatcttggg
gaggccatgcgctttgtggggcgccacgtcttcaagcgaacccgtaaagcgttgacgatg
aggaaggtggcagtgttcttcaccaacgggccctctgtggacagcgctgccatcgtcacg
gccgccatggagttcaaggccctgaacatcgctcctgctgtcatcgccatgaggaactcc
cccgatgttcaacgggcttttgaggctgatgacacgggcagcttcatccttgttcggctg
gtggataggtcacaggaccaaaatgctgtgctgacaagaatcaaaaattgcgtcatctgc
tacgaccactgtaaaccagcccaggagtgtgattttactgacgctcagcggcccctggtg
gtggatatggacctgaccctggtggtggacggttcaagggagatccgggccgaccagtac
gctggcatccaggagcttctgggctcggtggtgaagcaggtagcctggagccccaaaccc
agcgtggctgacggccgggccagggtggcccttctccagaccagtggttctctgctcccc
cagacttcccaggccgtcaaggtagagtttgacctgcagaagtaccacaaccacattggt
ctacagacacacctgaggagcatgcagcagcagggaggagtgtcgtctctggggcagacc
ctggagtacgctctgagcaaggtgttcctcaaggccaccaggcccaggaagagtagagtg
gtgctggctgtggtgggggccaagacagcccactgggaccaggccaagctggcctccatt
tcccagaaggccaagtgtcagggtgtttccctgtttgtgatcgcggtgggcgaccattac
aacagcacccaggtggaggagttggcgagcacgccgtcagggcagcacctgctccatctg
tggcacgtgaaggagtgggagagaggctacgcacagcgcttcttcagagccttcctcagg
gtcctcagcaagggaatgaacagctaccctcctgcccatctcaaactcaagtgtgagctg
atactgggacaggaacacggacagggacaaggacaggcagagtgggaggagtggaaggag
gaagaggaggagtacacagatgaggaggagttcctggagcacactggtgtatttccgact
cagatagctcttgaccaggttgacactatacatgccttctccaggggagatggagccact
tcacccccccggccacagccaaactctaatgatcacacaaccctcctgaggacagaggaa
agtacagttcttaaccaggatgcatgtttcttcaaacaggacaagggaggttgtgacaac
tacactctgaagtggtactttgacacgacacagagcgagtgctcccgtttctggtatggc
ggctgtggcggcaacggtaaccgcttcgagacgcaggagacttgcgaaggcctctgtctg
aggaggaactccacacatctaaaaccctga
DBGET
integrated database retrieval system
