Salvelinus namaycush (lake trout): 120031972
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Entry
120031972 CDS
T07522
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120031972
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120031972
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
OVT1
Motif
Other DBs
NCBI-GeneID:
120031972
NCBI-ProteinID:
XP_038833791
UniProt:
A0A8U0TZS3
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Position
Sna38:3809156..3843839
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AA seq
1781 aa
AA seq
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MLILHIASLLTLWCRSFAQLPEFGDVCPEGSCYPATGDLLIGRAHQLTASSTCGIEKPER
FCIVGHLEEEKKCFVCDSREMYDERLNHTTSHSIENLVTTFAPNRLKTWWQSENGVENVT
IQLNLEAEFHFTHLIMTFKTFRPATMVIERSMDFGKKWQVYRYYSYNCESAFPGISVGPM
VKVDDIICDSRYSDIEPSAEGEVIFRVLDPAFEIEDPYSPRIQNMLKITNLRVQFSKLNT
LGDNLLDSRDEVTEKYYYALFDMVVRGNCFCYGHASKCSPVDGIHVGTEGMVHGHCMCNH
NTEGLNCEHCKDFYNDLPWRPAEGHNTNACKMCECNHHSRSCHFDMAVYLSTGNVSGGVC
DECQHETMGRQCEQCRPFYYQHPERHLRDPNICEPCSCDPAGSLQGGVCDGRTDVSAGLI
AGQCRCKTSVEGERCDHCRQGHYGLGQGPNGCLQCTCNPLGTLPGGSPCDMDTGNCFCKR
LITGRNCDQCLPHHWGLSNDMDGCRPCDCDQGGAVNNDCSPISGQCQCREHMYGRRCDQV
ESGYYFIALDHYTYEAEDAKHGPGVKVVPRPYPLNRSPTWTGPGFVNVPEGAHLEFHINN
LPDSMDYDVLIRYEPQLPEQWEQVEIRVIRPYSMRVGQPASPCENTLPGGDQQLVSLPPG
SRHVVLPRPVCLDKGRNYTLRLSLPLYSSLSDVQSPYTLIDSLVLIPRVRELELFEGSQG
EEAWDTFQRYRCLESSQSVIKSPMTDICNDYIFSVSALLHQGAMACQCDAQGSLSAVCDP
RGGQCRCRPNMAGRNCDRCAPATFLFSPSGCRPCECNPVGSVNAFCHEATGQCECVPGAS
GRQCAHCLPGYWGFPQCRPCQCNGNSDYCHHQTGECQGCRAFTTGHMCERCLDGYHGDPV
LGLGGHCRPCMCPDGPGSGRQYANGCYQTANNYRLVCVCSPGYRGARCDECAPGHYGNPQ
VPTGRCLPCQCNDNIDQLDSGSCDARTGVCLKCLHHTEGYGCQRCKLGYYGNAATQSCRR
CMCGSVGTTSEACPSPGECHCDLQTGQCPCRPNVIGQNCDRCAPDTFNIGSRQGCQTCDC
DQTHSFGTSCNELSGQCSCRPGFGGRKCNECRDKFWGDPEVKCQACDCDLRGIASEQCHR
SSGQCVCVEGVSGPRCNQCARGYHGEFPACQRCHQCFGEWDGVVGELTNQTQRLKDHVTE
LQTNGVTAPYTDTVSSLEMSANAISGIVENNPAIQKMEDVQQMMQQVTEMVADLNERLNV
SEDSLSRLVVNANYTEASLDTLREQARELERTVKDIGDHIKAVKNSNIEGAMDTITDAHL
ESKRAEIRVNQTTSYPDNTLEQSATLRREAEARLSQNQAEFDLRQQKHTERLERLTMELD
TLDLSELSKQTCGAAGGEEGCAASPCGGVGCVSEDGTHRCGGDGCDGLVTQTQSTLKTAK
DFDQEILSTMQEVDKLSRMVWEVKVHADEAKLSAREVLLKSNQSRDRVEHTNEQLRSLIK
EIRDLLTNDRANVEVIEAVSNEVLALKMPTSPGQLEALTKEIRDRVGTLTSVEDILSQSA
NDIHTAERLLEQARTASQEASEVKETAALVKEALDTTERAQNSAINAVKQVYNNTRGTLD
LITSVESETAESELRLSNATLRLLQLERDVTLLRERSLVTSHRTQSTERLSETAGQDAEQ
ALQEFDSEVKGQYSVVEGLVVTKAEGVSDAKKRAELLQQEAKELLTQTSGKLQRLRELER
SYAANQRTLEAKAGQLAGLEKTARQLLDDISQKVMVYSTCS
NT seq
5346 nt
NT seq
+upstream
nt +downstream
nt
atgttgatattgcacatcgcatcacttttgaccctctggtgtcggtcctttgcgcagctg
ccggagtttggggatgtgtgccctgaggggagctgctaccccgccaccggggaccttctg
atcggccgtgcgcaccagctcaccgcctcctccacctgcggcattgagaagcctgaacgc
ttttgcattgttggtcacctggaggaggagaagaagtgttttgtgtgtgactccagggag
atgtatgatgagaggctgaaccacacgaccagccacagcatcgaaaacttggtcaccacc
tttgcccccaaccgcctcaagacctggtggcagtctgagaatggtgtggagaatgtgacc
attcaactgaacctggaagctgagttccacttcacacatctcatcatgacctttaagaca
ttccgtccggctaccatggtgatcgagcgttccatggattttgggaagaagtggcaggtg
taccgttactatagctacaactgtgagtccgccttccctgggatatccgtgggacccatg
gtcaaagtggacgacatcatctgtgattcccgctactctgacatagagccatccgcagag
ggagaggtgatattcagggtgctggacccagcatttgagattgaagacccttacagtccc
aggatacagaacatgctgaagatcactaacctgcgtgtccagtttagtaagctcaacaca
ctgggtgacaacctgctggactccagagacgaggtcacagagaaatactattatgccctc
ttcgacatggtcgtccgcggcaactgcttctgctacggacatgcctccaagtgttcccct
gtcgatgggatacatgtaggcacagagggcatggtccatggtcactgtatgtgtaaccac
aacacagagggtctgaactgtgagcactgtaaggacttctacaacgacctgccctggagg
cctgcagagggacacaacaccaatgcctgcaagatgtgcgagtgtaaccaccactccagg
tcatgtcactttgacatggctgtgtatctgtctacggggaacgtgagtggaggagtgtgt
gatgagtgtcaacacgagaccatggggcgtcagtgtgagcagtgcagacccttctactac
cagcaccccgaaagacacctgagagaccccaacatctgcgaaccgtgtagctgtgacccg
gcgggctcccttcagggtggtgtgtgtgacggcaggacagacgtgtctgctggtctgata
gcaggacagtgtcgctgtaagaccagtgtggagggagagcgctgcgaccactgtagacag
ggacactacggcctggggcagggaccaaacggctgcttgcagtgtacctgtaaccctctg
ggcacgctgcctggaggaagcccatgtgacatggacacaggaaactgcttctgcaaacgc
ctcatcaccggcaggaactgtgaccagtgtctgccgcatcactgggggctgagtaatgac
atggacggctgcagaccatgtgactgcgaccagggcggagccgtcaacaatgattgttct
ccgatatcaggccagtgtcagtgtcgagaacacatgtatgggaggcgttgtgaccaggtg
gagtcaggatactacttcatcgccctggaccactacacctacgaggctgaggacgccaag
cacggccctggtgtgaaggtggttcccaggccctatcctctgaaccgtagtcctacctgg
acagggccagggtttgtcaacgtacccgagggagcccacctggagttccacatcaacaac
ctacctgactccatggactacgacgtgctgatccgctatgaaccacagttgccggagcag
tgggagcaggtggagatcagagtgatacgtccgtactcaatgagagtggggcagccagcc
agtccatgtgaaaacactctaccaggaggagatcagcagttggtgtctcttcctccagga
tccagacatgtggtgctcccgaggcctgtgtgtctggacaagggacggaactacaccctg
cgtctcagtctgcctctctactcctctctcagtgacgtccaaagcccctacacactcatc
gactccttggtgttgattccgcgggtgcgtgagctggagttgtttgagggttctcagggc
gaggaggcgtgggatacgttccagaggtaccgctgtctggagagcagccagagcgtcatc
aagagccccatgacggacatctgcaacgactacatcttcagtgtgtctgccctgctacac
cagggggctatggcgtgccagtgtgacgcccagggctcgctcagtgcggtgtgcgacccc
agaggtgggcagtgccggtgtcggcccaacatggcgggcaggaactgtgaccgctgtgcc
cccgccaccttcctgttcagcccctcaggatgcagaccctgtgagtgtaatcctgtgggt
tctgtgaacgctttctgccacgaggccacaggtcagtgtgagtgtgtgccaggggcatca
ggacgtcagtgtgcccactgcctgccaggctactggggcttccctcaatgccggccctgc
cagtgcaacggcaacagcgactactgccaccatcagactggagagtgccagggctgccgc
gccttcaccaccgggcacatgtgtgaaaggtgtctggatggttaccatggtgacccagtg
ttgggtttggggggtcactgccgcccctgcatgtgtccagatgggccggggagcggacgc
cagtatgcaaacggctgctaccagaccgccaacaactaccggctggtctgtgtctgcagc
cctggatacagaggagccaggtgtgacgagtgtgcgccaggtcactatggtaacccccag
gtgcccaccgggcgctgtctgccctgccagtgtaacgacaacatcgaccagctggactcg
gggtcctgcgacgctcgcacaggcgtctgcctcaaatgcctgcaccataccgagggctat
ggctgccagcgctgcaagctgggttactacggcaacgccgccacccagagttgcaggagg
tgtatgtgtggttcagtgggcacgacgtcggaggcatgtccgtccccgggggagtgtcac
tgtgacctgcagactggccagtgtccctgccggcctaacgtgattggccagaactgtgac
cgctgtgcccctgatacgttcaacataggaagcagacagggctgtcagacctgtgactgt
gaccaaacccactcctttgggacgtcgtgcaatgagctgtcggggcagtgctcgtgcagg
ccaggtttcgggggaagaaaatgcaatgaatgccgagataagttctggggagatcccgag
gtcaaatgtcaagcgtgtgactgtgacctgcgtggcatcgccagcgagcagtgccaccgt
tcgtccggccagtgtgtgtgtgtggagggtgtgtctggaccccggtgtaaccagtgtgcc
agagggtaccatggggagttccccgcctgccaacgatgccaccagtgcttcggcgagtgg
gacggcgtggtaggggaactgaccaaccagacgcagcgtttgaaggatcatgtgacagag
ctccagaccaacggggtgacggcgccatacacagacaccgttagcagtctggagatgagt
gctaatgctatcagtgggatagtagagaacaaccctgctatacagaagatggaagatgta
caacagatgatgcagcaggtcactgagatggtggcagacctgaacgagaggctgaacgtc
tcagaggattccctgtcccgtctcgttgtaaatgccaactacaccgaggccagtctggac
acactgagagagcaggcccgagagctagagagaacagtcaaagacattggagaccacata
aaggctgtgaagaactctaacatagagggagcgatggacaccatcaccgatgcccacttg
gagtctaagagggcggagatccgtgtcaatcagaccaccagttaccccgacaacactttg
gaacagtcggctacactacggcgcgaagcggaggccagactgagccagaaccaggcggag
tttgacctgagacaacagaaacacacagagagactggagaggcttaccatggagctggac
actcttgacctatcagagctcagcaagcagacatgtggagcggctggtggggaggagggg
tgtgctgcgtcaccctgtggaggggtggggtgtgtgtcggaggacggcacccatcgctgt
ggtggagacgggtgtgacggtctggtcacacagacacaaagcactctgaaaacagccaag
gacttcgaccaggaaatcctgtccaccatgcaggaagtagataagctctctagaatggtg
tgggaagtgaaggtgcatgcggacgaggccaagctgagtgctcgggaggtgctgctgaag
tccaaccagagccgagatagagtggagcacaccaacgagcagctccgcagcctcatcaag
gagatacgagacctactcactaacgaccgtgccaacgtggaggtaatcgaagcggtgtcg
aacgaggtgttggccctgaagatgcccacgtcgcccgggcagctggaggctctgaccaag
gagattagagacagggtgggaaccctcaccagcgtggaggacatcctcagtcagagtgcc
aacgacatacacactgcagagaggctgctggagcaggctcgcaccgccagtcaggaggcg
tctgaggtgaaggagacagctgccctggtgaaggaggctctggatacaactgagcgtgct
cagaattctgccatcaatgccgtcaagcaggtctacaacaacaccaggggaacacttgac
ctcatcacgtctgtggagtcggagacggcggagtcagagttgcgtctgagtaacgccaca
ctgcgtctgctgcagctggagagagacgtgactctgctgagagagagaagcctagtcacc
agccaccgcacacagagcactgagagactgtctgagaccgccgggcaggacgcagagcag
gccctgcaggagtttgactcggaggtgaagggtcagtacagtgttgtggagggcttggtg
gtgacgaaggcagagggcgtgtctgacgccaagaagagggcggagctactccagcaggag
gccaaggagctgctcacccagacaagcggaaaactacagagactcagagagttggagagg
tcatatgcagccaaccagcgtactctagaggccaaggcaggtcagctggccgggctggag
aaaacggcacgccagctgcttgatgacatcagccagaaagtcatggtctacagcacctgt
tcttag
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