Salvelinus namaycush (lake trout): 120032509
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Entry
120032509 CDS
T07522
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120032509
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
Other 90S particles
120032509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
OB_RRP5_4th
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_19
TPR_14
Suf
HAT_Syf1_CNRKL1_C
OB_RRP5
ARM_TT21
NRDE-2
TPR_16
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
120032509
NCBI-ProteinID:
XP_038834558
UniProt:
A0A8U0TZV7
LinkDB
All DBs
Position
Sna39:8468786..8488584
Genome browser
AA seq
1804 aa
AA seq
DB search
MASTEEDFPRGGKTKQTTESKAEPVRRHTEVDNLFETHKPEESKKRKGQKEDALKKAKRQ
KTSKEEALKLNTTTSVDILQLKSLKVGTLLLGCVKEVADFEVTINLPSGLLGYLNISNIS
DSYTKILSDHLDSASSEEIFSLPSLFSPGMLVRCVVARLDTAKGGSVSIQLSINPKEVNK
GLSTGSLKAGLILSGCVESIEDHGYLVDLGIKGTKAFLPKQAAKDKTNSPKELKLGQYVT
SLLEEVKNDGRVVRLSISPTAVAQAVADTEHGWTLTNLLPGLLVKAQIKKVTLHGLILEF
LSSFTGLVDFMHLEPEQASTFREGDNVKACVLYVEPSTRLVGLSLRSHLLQPGGDVDLVA
TERIGEVTHGCKMTALHHLSGAMLELPDQTVVFVHRNHMKEPKEVFNLNRVMAKPEHTCR
IMDFSPMEQVHLVSLRQSIINAPFFRRYHDIQPGQIVQGTVTSLQSHGMMVKVTDYIRGL
VPRTHLSDIILKNPEKKYTVGMTIKCRVLSVYPQEKKLTLTRKRALVDSSLPLFLTYEDA
RRGRVSHGFIVCVKDFGCIVCFYGKVKGLVPPNELSTEPVIVPENMFYVGQVVKAKVLNC
DVEKEKLLLSFKAVAGGDTEGPPKPKFDFEVGKKVEVKVVSKVLTGLEVSILPEETTALL
PMMHLSDHVSNCLLLWEGLQEGDIISNIVCLSKNKQNITLTKKPTVKSFLEEGGVVAKEF
SDITVGVQLIGWVKNIMPYGVFVEFPYGLVGLAPKAAISDKFVSDTAAHFQLGHTVVARV
TNLDEEKHRFLVSLKVSEVTSPERDGQARLIRGLQERKAVMEMMANRGDSDLLQQLSAVT
IGQKMKMSVDEVREDGSVTFKSDELSAATVLATKDHAPGKLATGQKCMPVILHVDLVTSQ
VYVSLLTKLTGKRQEVEAGSTHTATVHHVDRDFAVISLGDTAQLTVIQTTNHPNETFRFD
SEKLTAGKTLTVTVTKSSCEELEGLPLVSWELAPTERKRLISDSKGSKGTYRYGDVVKGK
VKKVKPTCVLVTLEDGSTGCVHVSEIQEVVCVGTFPTSLLKIGSEVTARVIGGREGNSHR
FLPFSHRNFTYSMPELTLLPRNLKEDADVKPVKTKEKLKRYQVGDDVICFVSKYFPKRKC
LEVTTGPSVTGTVEQLAMTSDPEDAKHPEKLFKLGQAVSAKVVTVSSSKPSRLSLSLNGV
HKLEKGHVIMGLVQKLDPNLGLLVKLPFSAMGTVAMEDLADKYKRKPLERYSKGQLVRCC
IVGEANGKWQLSLRSSRTDPEKASVVKDPEIVSLEDLSEGQIVRGYMRTVNAHGVFVSLS
RSVKGRAQFQKATKYFVASHEDYAKKVPQATLLTTKILSIDKENGLVDLSLLQEDTGKPD
VLPESLGLHLRLTGEAKEKRDATKKRKRTESESKQGTAENVSKKTKKTKKGKKGKGEDSD
SGVEVYFREEEEENKLEVEKPVPVQPARLQVTGGFSWDVALSGLKPASAALGGEDNEVNT
KPQKKSHHEQEVEKREAEKALTKLETELMDPGLRPQTAASFERLLLGSPNSSLLWLQFMA
FHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENLYGTEESLQKVFERAVQY
CEPMPVYQQLADIYAKCQKTKEAEGLYKTMVKRFRQEKAVWLSYGTFLLQQGQSDAASAL
LQRAIKSLPNKDNVDLIAKFAQLEFRYGDVERGKTMLDRILTSYPKRTDLWSVFIDLMVK
HGSQKEVRAVFDRVIHLSVAVKRIKFFFKRYLEYEKKNGTPESIQAVKEKALEYVESKGT
EAAR
NT seq
5415 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacggaggaggacttccctcgtggaggtaaaaccaagcagaccactgaaagt
aaagcagaacctgtgagaaggcatacagaagtggacaatctgttcgagacacataaacca
gaagaatccaagaaaaggaagggacagaaagaggatgccttgaagaaagctaagaggcaa
aagacgagcaaagaggaggctctgaagctcaatacaacaacctctgtagatatcctacag
ttaaaaagcctgaaggtgggtaccctactgctgggctgtgtgaaggaggtggcagatttt
gaggtgacgattaacctgcccagcggccttttgggatacctgaacatttccaatatctcg
gactcgtacaccaagatactgagtgaccacctggactctgcttcttcagaggagatcttc
tctctccccagtctcttctccccgggcatgctggtcaggtgtgtggtagccaggttggac
actgccaaaggaggatcagtcagcattcagctgtcaatcaaccccaaagaggtcaacaag
ggcttgagtactggctctctgaaggctggcttgatcctgagtggttgtgtggagagtatt
gaggatcacggctacctggttgacctcggcatcaagggaaccaaggccttcctgcccaag
caggcagccaaagacaaaacgaatagtcctaaagagctgaagttgggccagtatgtgact
tctctgttggaggaggtgaagaacgatgggcgtgtggtccgtctgtccatcagccccacg
gcggtggctcaggccgttgcagacacagagcacggctggacccttaccaacctgctgcct
ggcctactggtcaaggcccagatcaaaaaagtgaccctacacggtctgattctggagttc
ctctcttccttcaccggcctggtggactttatgcacctggaaccagaacaggcctctaca
ttcagggagggagacaatgtgaaggcctgcgtcctttatgtggagccgtccacccggctg
gtgggcctgtccctgcgcagccacctgctgcagccagggggcgacgtggacctggtggcc
actgagaggataggggaggtgacgcatggctgcaagatgaccgctctccatcacctgtct
ggagccatgctggagctgcctgaccagactgtggtgtttgtacataggaaccacatgaag
gagcccaaggaggtgttcaacctgaaccgtgtcatggccaagcctgaacacacctgtagg
atcatggacttcagccccatggagcaggtgcacctggtcagcctgcgtcagagcatcatt
aatgccccgttcttcagaagataccatgacatccaacctggacagattgttcagggcacg
gtgacatccctccagagccatggcatgatggtgaaggtgacagactacatcagaggcctg
gttccacggacacacctctctgacatcatcctcaagaaccccgagaagaagtacacagtg
ggcatgaccatcaagtgccgggtgttgtcggtgtacccgcaggagaagaagctgacccta
accaggaagagggccctggtagattcctccctccccctgttcctgacctacgaagatgcc
cgccgcggtcgcgtctcccacgggttcatcgtctgtgtcaaggactttggatgcatcgtc
tgtttctacggcaaagtcaaggggctagtgccccccaacgagctcagcacggagccggtg
atagttcctgagaacatgttctacgtcggacaggtggtgaaggctaaagtgctgaactgt
gacgtggagaaggagaagctccttctttccttcaaggcagtggcaggaggagacactgag
ggaccgcctaaacccaagtttgactttgaggttgggaagaaagtggaggttaaggtggtg
agtaaagtccttaccggtctggaggtgtccattctgccagaggagaccaccgccttgcta
cccatgatgcacctctccgaccacgtgtccaactgcctactgctgtgggaggggctgcaa
gagggtgacatcatctccaacattgtctgcctcagcaagaacaaacagaatattaccctg
actaaaaagcccactgtgaagtcattcctggaggaggggggtgtggtggctaaggagttc
tctgacatcacagttggggtgcagctgattggctgggtcaagaacatcatgccctacgga
gtgtttgtggagttcccctatggcctggttggcctggcccctaaagcggccataagtgac
aagttcgtcagcgacacggcggctcacttccagctgggccatacggtggttgccagggtg
accaacttggacgaggagaagcacaggttcctggtcagtctcaaggtgtcagaggtcacc
tcccctgagagagacggccaggccaggctgatccgaggcctgcaggagaggaaggccgtg
atggagatgatggccaacagaggtgactctgacctactccagcagctgtctgcggtgacc
ataggccagaagatgaagatgagcgtagacgaggtgagggaggatgggagtgtcaccttc
aagtcagacgaactcagcgcagccaccgtactggccaccaaggaccatgcgccgggtaag
ttggcgacgggacagaagtgcatgccggtaatcctccacgttgacctcgtgacctctcaa
gtctacgtgtccctcttgacgaaactgaccggcaagaggcaagaggtggaggcagggtcc
acacacactgccactgtgcatcacgtcgaccgcgactttgccgtcatctcattgggcgac
acggcccaactgactgtcatccaaaccaccaatcaccccaacgaaactttccgcttcgac
tctgagaaactgaccgccggtaaaaccctgacggtcaccgtcaccaaatccagctgcgag
gaactagaagggctccccctagtgtcctgggaactcgccccgaccgaacgcaagagatta
atctccgactccaaggggtcgaagggcacgtatcgctacggcgacgtggtcaaggggaag
gtgaagaaagtgaagcctacgtgtgtgctggtgacgctagaggacgggagcacggggtgc
gtgcacgtgtccgagatacaggaagtggtgtgcgtgggaacattccccacgtccctcctc
aagataggaagtgaggtcacagcccgggtcatcggaggacgggagggcaacagtcacagg
ttcttgccgttctcccatcgcaacttcacttactccatgcctgaactcacacttcttccc
aggaacctgaaagaagacgcagatgttaagcctgtcaagaccaaagagaagctgaagcgt
tatcaggtcggagacgacgtcatttgctttgtgtcaaagtactttccaaagaggaagtgt
ctagaagtgactactggtccgtcagtaactggaactgttgaacaactggccatgacctct
gaccctgaagatgccaaacacccagagaagctgttcaagctgggccaggcggtcagtgct
aaggtggtgacagtcagctcctccaagccctcacgcctctcattgtctctcaatggtgta
cacaagttggagaagggccatgtaatcatggggttggtgcagaagctagatcccaacctg
ggtctgctggtgaagctgccattcagcgccatgggaacggttgccatggaggacctggcc
gacaaatataagcgaaaacctctggagcggtacagcaagggccagctggtcaggtgctgc
attgtaggagaggcgaatggcaaatggcagttgtccctccgctcttcgaggacggaccca
gagaaggcctcggtagtcaaggaccccgagattgtgtctctagaagacctgtcagagggg
cagatcgtcagaggctatatgaggactgtcaatgcacatggagtctttgttagtttgtct
agatccgtaaagggcagagcccagttccagaaggccactaagtactttgtggctagccac
gaagactatgccaagaaagtaccacaggccacactgctcaccaccaagatcctcagcatc
gacaaagaaaacggtctggtggatctgtctctgctccaagaggacactgggaaaccagac
gtgctcccagaatccctggggctgcacctgcgcctgacaggagaggccaaggagaagcgt
gacgccaccaagaagaggaaacgcacagagtcggagagcaaacagggaactgcagaaaat
gtttcgaagaagacgaagaagacgaagaaggggaagaagggtaaaggggaggacagcgac
agcggagtggaggtgtacttcagagaagaagaggaggaaaataagttggaggtagagaag
cccgtcccagtgcagccagccagactgcaggtgaccggagggttctcctgggatgtagcg
ctgagcggcctgaaaccagcatccgctgccctggggggggaggacaacgaggtgaatacc
aagccccagaagaagtctcaccatgagcaggaggtggagaagcgggaggctgagaaggcc
ctgaccaagctggagacggagctgatggacccaggcctgcgaccccagacggcggctagc
tttgagcgcctgctactaggctcccctaacagctctctgctctggctgcaattcatggcc
ttccacctgcaggccacacagatagaacaggctagagcggtggctgagagggctctgaag
actatctccttcagagaagagcaggagaagctgaatgtgtgggtggctctgttgaacctt
gagaacctgtatgggacagaggagagtcttcagaaggtgtttgagcgagccgtgcagtat
tgtgaacccatgcccgtctaccagcagctggctgacatctacgccaagtgtcagaagact
aaggaggcggaaggtctgtacaagaccatggtgaagcggttccgtcaggagaaggctgtg
tggctgagctacgggaccttcctgcttcagcagggtcagagtgacgcggccagcgccctg
ctacagagggccatcaagagcctgcctaacaaagacaatgtggatctgatagcgaagttt
gcccagctggagttccgctacggagacgtagagcgaggaaagaccatgttggacaggatc
ctgaccagctaccccaaacgcaccgacctgtggtccgtcttcatagacctcatggtcaaa
cacggctcccagaaggaagtccgggctgtgtttgaccgtgtgatccacctgagtgtggcg
gtgaagaggatcaagttcttcttcaagcgttacctggagtatgagaagaagaacggcacg
ccagagagcatccaggctgtcaaggagaaggctctggagtacgtggagtctaaagggaca
gaggccgccagatag
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