Salvelinus namaycush (lake trout): 120032601
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Entry
120032601 CDS
T07522
Name
(RefSeq) nuclear pore complex protein Nup133-like
KO
K14300
nuclear pore complex protein Nup133
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120032601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120032601
03036 Chromosome and associated proteins [BR:
snh03036
]
120032601
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120032601
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120032601
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin_C
Nucleoporin_N
Motif
Other DBs
NCBI-GeneID:
120032601
NCBI-ProteinID:
XP_038834692
UniProt:
A0A8U0Q0Q9
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Position
Sna39:13938537..13950771
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AA seq
1140 aa
AA seq
DB search
MFSPRPTPSSGRRQSSRVTGRKSLAGTPTGLLFSPRRTSLAARSTPTRVQSYSTSEALHF
DVQTFGSSLPVKVMEALTMADADDQISVKVDESGWAWMVCGERLIIWKICQTAVAKLSVC
KGLQLPASEFAYYADLISISSPSPLETATVQSISVMAVAPEGTARFWPSLAHEGNYTETV
VDMGENLCNFVVAVRGGSFIVSSYKGQMMRLGADPSGKLLQRALQQGQGVLSGIGRRVSS
LFGMLAPLTNNNLHSVLWVGETGCLYTLTSCGLSKWEVDEVTEHQVLSWDSSRALTESVA
DAIWGSESNYEEIKEGVNVTYMDMQLSQDGLVVLAAAWHPSDSPCLAYFCLVTLLDNGNN
ISEELSVEVTKYNPPFQSEDALQAMRLMLPRASSPAAFMYNEELVFACSTGTGRGGLPEE
KIPFNTSGDRLRGGGCCANLPVFFSQNSGLVAVVARESASMLPETMEDSLCFSLAGAGPE
ATAMETPTRMEPVAQEDKTKLLKAAFLQFCRNDLVGAQTMTDELFPPEGDGDGEVGGELD
LVVIRINLDLVDDYPASDPRWAESVPDESAGFPLTSLIILHQLEDKMKAHGCFMDFLLQV
GLLDRLGQTAVRSSPMATRLLLCEHAEKLQAAMTLKNHHAKHGDLVNRAILIALRKSNAT
VSTSLTAADVFFREVSQISSVFECLLEEEERTLKENPVDSVKWAEVVLSVNTIIKDMLQA
AGQYRDTKASLYRVSESTPAEPEYIPWTASSGLGGVRTVITRQHEVILRDVYPHADSELR
NGLNEQLAALLDVLLGGYVSQLTSLRPGRPGQQDRYNTLEMEYTQRRSELLAPLLELGQY
QWVAALGEKYCDFDILVQMCEQTDNQNRLQHYMAKFADQNFADFLFRWYMEKGKRGKLLS
QPIAQHQQLASFLQSHEHLSWLHHIHVHDFSSAHKTLYGQANMETRYFVKKKTLLALSKL
TALASDMPEAVMKKQVDDMVEQERFLLHQETLPKQLLEEKQQNPDTMPLLSAHNLINLYI
CDDNRRANEYDFKKALDLLEYIDEEDAVDIEGLKCEIFCKALKKDDWLSADGNDDPLEAA
KDSIFVKILLKLIQEGVSLQTYLPDVKDLLQLDEMEALKSKPTFEFVLRANYEHYLQAQI
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtttagccctcgtcccacccccagttcaggccgaaggcagtcctcaagggtcaccggt
agaaagagtctcgccggtacacctacagggcttctcttttccccacgtaggacgtcgtta
gcagcgagatcaactcccacgcgtgtgcagagctactcaacttcagaagcactccacttc
gatgtccagacgtttggctcttctctacctgtcaaagtcatggaggctttgacaatggct
gatgccgatgaccagatctctgtgaaggtggatgagagtggctgggcctggatggtgtgt
ggagagagactgatcatctggaagatctgccagactgctgttgcaaagttgtcagtatgt
aagggcctccagctgcccgccagtgagtttgcctactatgctgatctcatctccatatca
tctcccagccctctggagactgccactgttcagtctatctctgtcatggcggtggctcca
gagggaacagcccggttctggcccagtttggcccacgaggggaattacactgagactgtg
gtcgacatgggcgaaaacctctgcaactttgttgtggctgttagggggggtagtttcatc
gtgtcatcctataagggccagatgatgcgtctcggggcggacccctccggaaagctgctg
cagagggcgctacagcagggccagggggtgctttccgggatcggacgccgcgtctccagc
ctgtttggcatgctcgccccgctcaccaacaacaatctccacagtgttctgtgggtggga
gagacgggctgcctgtatactctgacctcctgtgggctcagtaaatgggaggtggatgag
gtcacagagcaccaggtcctcagctgggactccagccgcgctctgacggagagtgtcgcc
gacgccatctgggggtcagagagcaactatgaggaaatcaaggaaggagtgaacgttacc
tacatggacatgcaactgagccaggatggcctggtagtgttggcggcagcctggcacccc
tcagactccccctgcctggcctacttctgcctggtcaccctgctggacaacggcaacaac
atctccgaggagctttctgtggaggtcaccaagtacaacccccccttccagagtgaggat
gctctccaggccatgaggctgatgttaccacgggcctccagccctgctgccttcatgtac
aacgaggagctggtgtttgcctgctccaccggtaccggcagaggaggtctacctgaggag
aagatccccttcaacacatctggtgaccgtctgcgtggtgggggctgctgtgccaacctg
ccagtgttcttctcccagaacagtggtctggtggccgtggtggccagggagagtgcctcc
atgctgcctgagaccatggaggactccctctgcttctccctggctggggccggccctgag
gcaactgctatggagactccgactaggatggagcctgtagcgcaagaggacaaaaccaaa
ctccttaaagcagcgttcctgcagttctgccggaatgacctggttggggcccagaccatg
acagacgagctgttccccccggagggggacggagacggggaggtgggcggggagctggac
ctggtggtgatccggatcaacctggacctggtggacgactacccagcctcagacccccgc
tgggccgagtctgtccctgacgagagtgctggcttccccctgacctccctcatcatcctc
caccagctagaggacaagatgaaggcccacggctgcttcatggacttcctgctacaggtg
ggtctcctggaccggctgggccagaccgcggtgcgctcgtctcccatggcgacgcgcctg
ttgctgtgtgaacacgccgagaagctacaggccgccatgacgctgaagaaccaccacgcc
aagcacggcgatctggtcaatcgcgccatcctcattgccttgaggaagagcaacgcaacc
gtgtccaccagcctcacggccgcagacgtcttcttcagagaggtgtctcagatctcctca
gtctttgagtgtctactagaagaggaggagaggactctgaaggagaaccctgtggactct
gtgaagtgggctgaagtggtgctcagtgtcaacaccatcatcaaggacatgctgcaggct
gctggtcagtacagagacaccaaggcctcactgtacagagtctcagagagcacccctgct
gagccagaatacatcccatggaccgcctctagcggtctgggaggggttcgcaccgtcatc
acccgccagcacgaggtgatcctgcgtgacgtgtaccctcacgccgactcggagctgcgc
aatggcctgaacgagcagctggcagcgctgctggacgtgctcctgggaggctacgtttcc
cagctgacctcactgagaccgggccgtccgggccagcaggaccgctacaacaccctggag
atggagtacacgcagcgccgctctgagctgctcgcaccactgttggagctgggtcagtac
cagtgggtggcggcactgggagagaagtactgtgactttgacatcctggtccagatgtgt
gagcagactgacaaccaaaacagactgcagcactacatggccaagttcgccgaccagaac
tttgcggacttcctgttccgctggtacatggagaaggggaagaggggcaagctgctctcc
cagcccatcgcccagcaccagcagctggccagcttcctgcagtcccacgaacacctcagc
tggctgcaccacatccacgtccacgacttcagcagtgcccacaaaaccctgtatggccag
gccaacatggagacgcgttactttgtgaagaagaagaccctgttggctctcagtaaactg
actgccctggcatcagacatgcctgaggctgtgatgaagaaacaagtagacgacatggta
gagcaggagcggttcctgctgcaccaggagactctgcccaaacagctgctggaggagaaa
caacagaacccagacaccatgcccctgctcagcgctcacaaccttattaatctgtatatt
tgtgatgacaaccgacgagccaatgagtatgacttcaagaaggctctggatctactggag
tacatagacgaggaggacgctgtggacattgagggactcaagtgtgagatcttctgcaag
gccctcaagaaagacgactggttgtctgctgatgggaacgatgaccctctggaggcagcc
aaggacagtatctttgtcaagatcctcctcaagctcatacaagaaggtgtttctctacag
acctaccttcctgacgtcaaagaccttcttcagctggacgagatggaggctttgaaatca
aagcccacttttgagtttgtactgcgggccaactatgaacattacctgcaagcacagatc
tga
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