Salvelinus namaycush (lake trout): 120032844
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Entry
120032844 CDS
T07522
Name
(RefSeq) protein jagged-1b-like
KO
K06052
jagged-1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04330
Notch signaling pathway
snh04371
Apelin signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
120032844
04371 Apelin signaling pathway
120032844
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
snh04090
]
120032844
CD molecules [BR:
snh04090
]
Proteins
120032844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF
hEGF
MNNL
EGF_TEN
JAG1
EGF_2
DSL
EGF_DL_JAG
JAG1-like_EGF2
EGF_Teneurin
EGF_CA
EGF_3
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
120032844
NCBI-ProteinID:
XP_038834983
UniProt:
A0A8U0Q1Z9
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All DBs
Position
Sna39:complement(19199070..19231718)
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AA seq
1251 aa
AA seq
DB search
MILRPSSSCAAFSIHVFLQCMWMKVAVASGHFELQIVSMQNVNGELQTGVCCDGSRNAAD
RKCTRDECDTYFKVCLKEYQLKVSSAGPCSFGTASTPVVGGNTFSLRNVRSEKSRNDKSR
IVLPFSFAWPRSYTLIVEALDFNNDSSTGSVGGERIEKAVQSGMINPSRQWQSLKHNGPV
GQFEYQIRVSCDEHYYGFGCNKFCRPRNDFFGHYNCDHNGNKTCLEGWSGPECSTAICRQ
GCSTEHGSCKLPGDCKCLYGWQGEYCDKCIPHPGCVHGSCVEPWQCLCDTNFGGQLCDKD
LNTCGTFQPCLNMGTCSNTGPDKYHCACPDGYSGVNCEKAEHACLSEPCFNRGSCVETSQ
GFECQCAPGWSGPYCSINVDECLPNPCGHGGTCQDQVNGFKCTCPFQWSGKTCLIDANEC
EGDPCLNANSCRNLIGGYFCECLPGWMGQNCDTNINDCQDQCQNGGTCKDMVNGYRCVCP
SGFSGEHCEKDVDECASGPCLNGGRCKDDVNGFQCLCLPGFSGNFCQLDIDYCMPNPCQN
GAQCFNLATDYFCKCPEDYEGKNCSHLKDHCRTTPCKVIDSCTVSVASNSTPGGTRLISS
NVCGPHGRCRSQAGGQFSCECQEGFTGTYCHENINDCESGPCQNGGTCIDKVSLYQCICA
EGWEGPNCDNNIDDCNTNPCRNRGTCRDLVNDFFCECKNGWKGKTCHSRESQCDEATCNN
GGTCYDEGDTFKCMCAAGWEGATCNIAKNSSCLPSPCENGGTCVVSGDSFTCVCKDGWEG
LTCNQNSNDCNPHPCYNSGTCVDGDNWYRCECAAGFAGPDCRININECQSSPCAFGSTCV
DEINGYRCLCPPGRAGPRCQEVTGRPCVVNGLVAVDGAKWDDDCNTCQCHNGKVTCTMIW
CGPKSCRVHSKSPSGGECPVGQMCVPVRDEFCFVKPCPSQGECWSASHSPKPHAKCHPES
NCANVTFTFNKDTMPQGLTVENICSKLRSLYVVRNLSSEYSVSMTCEPSATANNEIHVAI
STEDPRRGKAPIKEITDKFIDLVSKRNGNGTIITAIIEVRVQRRQSHNPNADYLVPLLVS
VVIVIWLLAVASAFIWCLKRRKPSTHTGVNTQLSSPATTAEDTNNAVNNVREQLNQIKNP
IDKHGLTNGLPPVKEHPSHHHYHYEDKNSLINGKIRTNNSDVGSHHSDDEESEKRFQKAR
FPRQTPYTLVDREERSPQPLSTAGKHPNWINKQDNRDLESAQSLNRMEFIV
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atgattttgagaccgagttcaagctgtgctgctttttctattcatgtcttcttgcaatgc
atgtggatgaaggtggctgtggcatcaggacacttcgaattgcaaattgtgtcgatgcag
aacgtgaatggcgaactgcagactggcgtgtgctgcgatggatctcggaatgccgcagat
cgcaaatgcacgagggacgagtgtgatacctattttaaagtgtgtctaaaggagtaccag
ttgaaggtctcttcggcgggcccatgcagtttcgggacggcttcaacacccgtggtcgga
gggaatactttttctttgcggaacgtgaggagtgagaagtcgaggaatgacaagtcgagg
attgtgttacctttcagcttcgcttggccgaggtcctatacgttgatcgtggaggccttg
gacttcaacaacgactcttctacgggcagcgtgggaggcgagaggatcgagaaggctgtt
cagtcgggcatgatcaaccccagccgccagtggcagagcctgaagcacaacgggccggtg
ggccagttcgagtaccagatccgggtcagctgcgacgagcactactatggtttcggctgc
aacaagttctgccgtccgcgcaacgacttttttggccactacaactgcgaccacaatggc
aacaagacctgcctcgaagggtggtctggaccagaatgcagcactgctatttgcaggcaa
ggctgcagcactgaacatggttcctgtaaattgcccggcgattgcaagtgtctgtacggc
tggcagggcgagtactgtgataagtgcatccctcacccgggctgtgtgcacggaagctgc
gtggaaccgtggcagtgcctctgtgacacaaactttggcggccagctctgcgacaaagac
ctgaacacatgtggtacgttccagccctgtctgaacatggggacctgcagcaacactgga
cctgacaagtaccactgtgcctgtcctgacggctactctggtgtcaactgcgagaaagcg
gagcatgcctgtctttcagagccctgttttaacagagggagctgtgtggagaccagtcag
ggcttcgagtgccagtgtgcccctggctggagtggcccctactgcagcatcaatgtggac
gagtgtctccccaacccctgtggccacgggggcacctgccaggaccaggtcaacggcttc
aagtgcacctgtcccttccagtggagcggcaagacctgcctcatcgacgccaatgagtgc
gaaggcgacccctgtctgaatgccaactcctgccgcaacctgattggagggtacttctgc
gagtgcctccctggttggatgggccagaactgcgacacaaatattaatgactgccaggac
cagtgtcaaaatgggggaacctgcaaggacatggtgaacgggtaccgctgcgtttgtccg
tcgggcttcagcggcgagcactgcgagaaggacgtagatgagtgtgccagtggcccatgc
ctgaacggcggccgttgcaaggacgacgtcaacggcttccagtgcctgtgcctgcccggt
ttctctggcaacttctgtcagctggatatcgactactgcatgccgaacccatgtcaaaac
ggggcccagtgtttcaacctggctaccgactacttctgcaaatgtcccgaagactacgag
ggcaagaactgttcccatttgaaggaccactgtcgtaccacaccctgcaaagtgattgac
agctgcacggtttccgtggcatccaacagcacccctgggggcacgcgtctgatttcgtcc
aatgtgtgcgggccccacgggcgctgccggagccaggctgggggccagttcagctgcgag
tgccaggagggcttcactgggacatactgccatgagaatataaatgactgtgaaagcggc
ccgtgtcagaacgggggaacgtgtattgacaaagtcagcctgtaccagtgcatctgtgcc
gagggttgggagggacccaactgcgacaacaacattgacgactgcaacaccaacccctgt
cgcaaccgcggcacgtgccgggacctggtgaacgacttcttctgtgagtgtaagaacgga
tggaagggcaagacatgtcactcaagggagagccagtgtgacgaggctacatgcaacaat
ggcgggacgtgctacgatgaaggggacaccttcaaatgcatgtgtgccgccggatgggag
ggtgccacctgtaatatagctaagaacagcagctgtctgcctagcccttgtgagaacgga
ggcacctgtgtggtcagtggagactctttcacctgtgtctgcaaagatggctgggagggc
ctgacctgcaaccaaaattccaacgactgcaatccccacccttgctataacagtggaacc
tgtgtggacggcgataactggtaccggtgtgagtgtgccgcaggattcgcaggaccagac
tgcaggattaacatcaacgagtgccagtcgtcgccttgcgcattcggctctacctgcgta
gacgagatcaacggctaccgctgcctgtgtccgccagggagggccggccccagatgccaa
gaagttactgggagaccctgtgttgtcaacggtctggtggccgtggacggggccaaatgg
gacgacgattgcaacacctgccagtgccacaatgggaaggtcacctgtacaatgatctgg
tgcggtcccaaatcctgccgggtccacagtaaaagccccagcggtggcgagtgcccggtc
ggtcagatgtgtgtgcccgtccgggacgagttctgttttgtcaagccatgccccagccag
ggcgagtgctggtcggcctcccacagtcccaagccccacgcaaagtgccaccccgagagc
aactgtgccaacgtcactttcaccttcaacaaggacaccatgccacagggcttgactgtt
gagaacatctgcagcaagctgaggagtctgtatgtggtgaggaacctctcgtcggagtac
tcggtgtccatgacatgcgagccatcggccacagccaacaacgagatccatgtagccatt
tcgacggaggaccccagaagaggcaaggcccctatcaaggagatcacggacaagttcata
gacctggtcagcaagcgaaacggcaacggcaccatcatcacagccatcatcgaggtccgc
gtccagaggaggcagagccacaaccccaatgcagactacctggtccccctgctggtgtct
gtagtcatcgtcatctggctcctggctgtggcctctgcgtttatctggtgcctcaagcgg
cgaaagcccagcacccacacgggtgtcaacacccagttgtcgtccccggcgacgaccgcc
gaagacaccaacaacgcagtcaacaacgtgcgcgagcagctcaaccagatcaagaacccc
atcgataaacacggtctgaccaatggcctacccccagttaaagaacaccccagccaccac
cactatcactacgaggacaagaactctcttatcaacggcaaaattagaacaaacaactcc
gacgtgggtagccaccattcggatgacgaggagtctgagaagaggtttcagaaggctagg
ttcccaaggcagacgccatatacgctagtggaccgggaggagcggagcccacagccgctc
agcacggccggcaaacaccccaactggattaacaaacaggacaacagagacttggagtcg
gcacagagcttaaaccgaatggaattcattgtatag
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