Salvelinus namaycush (lake trout): 120032956
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Entry
120032956 CDS
T07522
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120032956
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120032956
03036 Chromosome and associated proteins [BR:
snh03036
]
120032956
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
120032956
Coactivators
SAGA/TFTC/STAGA complex
120032956
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
120032956
STAGA complex
120032956
TFTC complex
120032956
SAGA complex
120032956
SLIK complex
120032956
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
Beta-prop_IFT122_1st
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_VPS8
ANAPC4_WD40
Beta-prop_Aladin
DSE1_N
Beta-prop_TEP1_C
PAC11
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
CFAP251_N
Beta-prop_WDR41
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_DCAF12
Tricorn_2nd
ASA1
Beta-prop_Nup120_160
WD_LRWD1
Beta-prop_NOL10_N
Beta-prop_WDR19_1st
DNAI3_WD
LisH_PAC1
LisH_TPL
VID27
Motif
Other DBs
NCBI-GeneID:
120032956
NCBI-ProteinID:
XP_038835162
UniProt:
A0A8U0Q370
LinkDB
All DBs
Position
39:8460571..8467275
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQDGQHNLEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADADDSPVSESAGAGSGGVPNVGADGGDANSLLSRV
SIATPVAPPATAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVMYPLYYNGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILSSMSKKEH
MKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTRFHPNANYVATGSADRT
IRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDSRVLLWDVGHGLMVGELKGH
TDTIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLL
GTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagcacaatctggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaatatcaatgcaaactcttcgtcacccggttctacgtct
tcgggcggtaaatcgaaatctcctgcgggatcgggtgaagatcaacagacactgctcgcg
gtgttgcaatttctcaagaggaataaattgaccgagtcggtcgatattttgcggcgagaa
gcgggcttatctgcagatgccgatgattccccggtatccgagtcggcgggagctggatcg
ggtggcgtcccaaatgtcggtgctgatgggggggatgccaactctctcctcagccgagtg
tcaatcgccacccccgtcgcacccccggccaccgcacccccaaaagtggtggcagcatca
ggtggggaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggac
cctgtcatgtacccactctactataatggcctgaagaagtttattgagtctgtcctggac
tgccacagagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggag
ctggtctacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggtgac
caggagtgttactacgaggaggacctccgcatcctctcgagcatgtccaagaaggaacac
atgaagggaaatgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcc
cgagactcctaccagctgctgaagaggcacctgcaggaacgtcagaacaaccagatctgg
aatattatacaggaacatctctatattgatatctttgacgggatgcctcggagtaaaagt
cagattgatgccatgtcgggcagtctggctggggagggcaagagagatgccaacaaagcc
aaggtgttctatggtcttctgaaggagccagagatcgaagtacctctggatgatgaggat
gaggaggcagagaacgaggagggcaaacccaagaagaagaaacctaagaaggacagcatg
ggctccaagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctcccc
gagttgaaggactctgacaagctggacaagatcatgaacatgaaggaggccactaagaag
atccgtctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttac
cagggtctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgct
gactccaccgttagggtgtggagcgtcacacccaagaaactacggcgggtcaaatctgca
gcagacctgagtaatattgataaagagtctgatgacgtgttggagaggatcatggatgag
aagacggccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagc
ttcagccctgacaggaactacctgttgtccagttctgaggacggtacggtcagactgtgg
agtctgcagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggac
actcagttctcaccctatggttactactttatctctgggggacatgaccgagtcgctcgt
ctgtgggcgactgaccactaccagcccctgcgtatgttcgctggtcacctggctgacatc
acgtgcacccgcttccaccctaacgccaactacgtggccacgggttcagctgaccgtacc
atccgcctctgggacgtcctgactggcaactgtgtccgcatcctcacgggtcacaagggc
cccattcattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgac
agcagggttctactgtgggatgttggtcacggcctaatggtcggagagctgaagggacat
actgataccatctacgccctcaagttcagcagggacggagagatactagcctcaggctca
atggataacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggat
gactttaccgcggcaacaggtcacatccatctaccagagaactcccaggagctgttgcta
ggcacctacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaaccta
ctgctggctgcaggggcctacaacccatga
DBGET
integrated database retrieval system
