Salvelinus namaycush (lake trout): 120033230
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Entry
120033230 CDS
T07522
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120033230
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
120033230
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
UBA_N4BP1
Motif
Other DBs
NCBI-GeneID:
120033230
NCBI-ProteinID:
XP_038835438
UniProt:
A0A8U0Q1R6
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Position
Sna40:complement(12500928..12506371)
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AA seq
901 aa
AA seq
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MGLKDHPEEDGAGRILDLGLDLEYLHIEGSVSRQAGADTGPSMERGEEEEEACKGSGSCS
LSTPGGKEGEVVGEESAGFDSDPEPARNSTGSNPAGRGSVSELDGVPVPNTHQPLCRTPC
VDLGSEGPPDPPSGEPSSGEALREYQSKLEFALKLGYTEELVRLVLAKLGPYTLINDILG
ELVKLGRKVETNQQLTGSTASQTAPSTCSSSSSSSSCGYVEAQQGRTDSPCPPGGGLSDK
DNLRPVVLDGSNVAMSHGNKEVFSCYGIQLAVDWFLERGHRDITVFVPSWKKEQSRPDAL
ITDQDILRRLEKDKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLASE
KPEWKKLIDERLLMYSFVNDKFMPPDDPLGRHGPSLENFLRKRPIMPEHKKQPCPYGKKC
TYGHKCKYYHPERSAQCQRSVADELRASAKTSATSTSAKGQAGEAGLVKSHSVPNNVAMG
TKRGSAPKRQCDPSIRALSYGEAEGKLRHAEKCNSLSSSSGSSCCSGSVTLSPAPGGPPS
ALSDPQEQPPSLGRDTPYMTLPHPHPDPYSSSCDPPDLSYYSVTPAHSGLAARRSPESRF
PLDTDLRLLGSSDCGSSGCDSYGERASCLCCPGPLLDKYIHHQHHQHHQHNRLYSQHSAP
LLEPHHPHPSSHTHTSVLYGYHQSLARGHSFPHDEPPDPHLKRPLYPLPPPLQHQAVGAR
SSCPGDYPSVSQSGPYPAGSPLGRCLANTGLETLSDSRLYERSLLPPRKAFSWDPYCSQP
PQSRYETYQSLPETHDVGWGHTSPWGQTTHSYHQPYPPHPSQPPHPSHAPQPSHPSMPPH
HMHQEPPALSRYGEVRGKVYLNLCNIFPSELVGRVMGRNPHVTDAQQLAAAILAEKSQSG
Y
NT seq
2706 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgaaggaccatccggaggaggatggagcaggccgcatccttgacctggggctg
gatttagagtacctccacatcgaaggctccgtcagcaggcaggctggcgccgatacaggg
cccagtatggagcggggcgaggaggaggaagaggcctgcaagggcagtggcagttgcagc
ttgtccacgcctggggggaaggagggggaggtggtgggggaggagagcgctgggttcgac
agtgacccggagccagcccgaaacagcaccggttctaacccggctggaagagggtccgta
tctgagctagatggagtgcctgttcccaacacccaccaacctctgtgcaggactccctgt
gtggacctggggtccgaggggcctcctgaccctccgtcgggggagccttcatccggggaa
gccctgagggagtaccagtccaagctggagtttgctctgaagctgggctacaccgaggag
ctggtgcggctggtgctggccaagctggggccgtacacactcatcaacgacatactggga
gagctggtcaaactgggccgtaaggtcgagacaaaccaacagctgactgggtccacggct
tcacagaccgccccctccacctgctcctcctcttcctcctcttcttcctgtgggtatgtg
gaggcgcagcaggggaggacagactccccttgtcccccaggaggaggtctgtctgataag
gacaacctgcggcccgtcgtcctggacggtagcaacgtggcaatgagccacggcaataaa
gaggtgttctcctgctacggcatccagctggctgttgattggttcctggagcgaggtcac
cgtgacatcactgtgtttgtgccatcctggaagaaagagcagtcccgccctgacgccctc
atcacagaccaggatatcttacgtcgtctggagaaggacaagatcttggtgttcactccg
tctcgtcgggtccagggtcgccgggtggtctgctatgacgaccgtttcatcgtcaagctg
gcctacgagtccgacggcatcatcgtctccaacgacaactaccgcgacctggccagtgag
aagccagagtggaagaagttaattgacgagcggctgctcatgtactcgtttgtcaatgac
aagttcatgcctcctgatgaccctctaggtcgtcatggtcccagtctggagaacttcctg
aggaaacgtcccatcatgccagagcacaagaagcagccctgtccttacggcaagaagtgc
acttacggccacaagtgtaagtactaccacccggagaggagtgcccagtgccagcgctcg
gtggcagacgagctgcgtgccagcgccaagacctctgccacctctactagcgccaagggc
caggctggcgaggccgggctggtgaagagccacagcgtgcccaacaatgtagcgatgggt
accaaaagaggttctgcccccaaaaggcagtgtgaccccagcatccgggcgctgtcctac
ggcgaggcagagggcaagctgagacacgctgagaaatgcaacagcctcagtagtagtagt
gggagtagttgttgtagtgggagtgttactctgtcccctgcccctggaggacccccctct
gccctcagcgacccccaggaacagccaccgagcctgggcagggacacaccctacatgacc
ctgccgcacccccaccctgacccctactcctccagctgtgaccctccagatctgagctac
tactcagtgacgccggcccactctggcctggcagcacggaggagtccggagtcccgcttc
ccgctggacacggacctgcgtctgctgggctcgtcagactgtggcagcagcggatgtgac
tcgtacggagagagagcctcctgtctgtgctgccccggccctctgctggacaaatacatc
caccatcagcatcatcagcaccatcaacacaaccgcctgtactctcaacactctgccccc
ctgctcgagccacaccacccccacccctcctcccacacccacacctctgtcctctatggc
tatcaccagagcctggcacggggccacagcttccctcacgacgagccccctgacccccac
ctgaagcgccctctgtaccccctcccgcctcccctccagcaccaggccgtaggcgcccgc
tccagctgccctggagactacccctctgtgtcccagtccggcccctaccctgctggctcc
cctctgggccgctgcctggccaacacggggctggagacgctgtcagactcccggctgtac
gaacgctccctgctgccccccaggaaagccttctcctgggatccctactgcagccaaccc
cctcagtcccgctatgagacttaccagagtctaccggagacccacgatgtaggctgggga
cacacatctccatggggacagaccacacactcttaccaccaaccctacccccctcacccc
tctcagccccctcacccatcccatgcccctcagccatcccacccgtccatgcccccccac
cacatgcaccaggagccccccgccctgagccggtacggggaggtgcgggggaaggtctac
ctcaacctgtgtaacatcttcccctctgagctggtgggccgggttatggggaggaacccc
catgtgacggacgcccagcagctagctgccgccatcttggctgagaagtcccagtccggc
tactaa
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