Salvelinus namaycush (lake trout): 120033384
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Entry
120033384 CDS
T07522
Name
(RefSeq) vacuolar protein sorting-associated protein 16 homolog isoform X1
KO
K20180
vacuolar protein sorting-associated protein 16
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04140
Autophagy - animal
snh04148
Efferocytosis
snh05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
120033384
04148 Efferocytosis
120033384
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
120033384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120033384
Membrane trafficking [BR:
snh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120033384
Hops complex
120033384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps16_N
Vps16_C
DUF740
Sipho_tail
Motif
Other DBs
NCBI-GeneID:
120033384
NCBI-ProteinID:
XP_038835638
UniProt:
A0A8U0U0W7
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Position
Sna40:complement(17554723..17568957)
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AA seq
845 aa
AA seq
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MAFITANWNPLGEAFYRKIELYEMGWSLRDGLKECLVAAAPYGGPIALLRQPQRPSSSAR
PQLEIYSSSGVNMASFPWKSGPVRQLGWTVCDDLLCIQEDGTVLIYDLFGAFKRHFSMGN
EVVQNQVLEAKVFHSPYGTGVAIVTGASRFTLATNIDDLKLRRLPEVPGLQGAPSCWAVL
TQDRQTKVLLANGADLYILDNTSCTPVTPPGLSPQACSIVNMAVSFSYKYLALFTDSGHL
WMGSANFKDKLSEVDTKVRTPPKQMVWCRRPKSQQPSVVIMWDRLLLVAGECTDTIQYTL
DEESVCVAELDGVRIVGGSRHELLQEVPSACQDIFKIASMAPGALLLEAHKEYEKSSQKA
DEYLREIKEQSVLGEAVRQCVEAAGYEHEPETQKTLLRAASFGKCFLSNYPPEPFVSMCR
DLKVLNSVRDYTVGIPLTHTQYKQMTVQVLIDRLVYRKLYPLAIEICRYLKTPEYQGVSR
VLKHWACCKVQQKEEPDESIAHAVSVKLGEAAGISYSEIAARAYECGRTELAIKLLEFEP
RSGEQVPLLLKMKRSQLALSKAIESGDTDLVYTVVTYLKNEMNRGDFFMTLRNQPVALSL
YRQFCKHQEQDTLKDLFNQDDDHQELGNFYVKASYKEKKLEARLSLLQSAVDEYNKARNE
FAAKATEEEMKLLRFQRRLDEEKGEALLGLSLQETLHALLTSNFHKQAEQLYRDFRVPDK
RYWWLKLTALAEKDDWEEMEKFAKSKKSPIGYLVCCLYNLYTKPFVEVCVKQHNKYEAKK
YVSKVTPEQKVKAHLAIGDLEGAAEAAIERRSEGEISTVLSRCSPTTDRALLERLNRARS
TAAKK
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggcatttataacggcaaactggaatccgctcggggaagcgttttacaggaagatcgag
ctgtatgagatgggatggagcttgagagatgggctcaaggaatgcctggtggcagcagcc
ccatacgggggaccgatcgctcttctaaggcagccacagaggccttcctccagcgcacgg
ccccagttggagatctactcttcctcaggcgtgaacatggccagcttcccgtggaagagt
ggcccagtgagacagctgggttggacggtgtgtgatgacctgctgtgtatccaggaggat
ggcacagtcctcatctacgacctgtttggtgccttcaaaagacacttcagcatgggcaac
gaggtggttcaaaaccaggtgctggaagccaaggtgttccactcgccctacggaaccggt
gtcgccatagtgacgggagcctcacgcttcaccctggccacgaacattgacgacctgaag
ctgaggagactcccggaagtcccaggcctccagggggcaccctcctgctgggcagtgctg
actcaggacagacagaccaaagtgctgctggccaacggagctgacctctacatactggac
aacacatcctgcacccctgtgacacctccaggcctctctccccaggcctgtagcatcgtg
aacatggctgtgtcattcagctataagtacctggctctgttcacagactctggacacctg
tggatgggctcagccaacttcaaggacaagctgagtgaggtggacaccaaggtgaggacc
cctcctaaacagatggtctggtgcagaaggccaaagagccagcagccctctgtggtaatc
atgtgggacaggctcctactggtggccggagagtgtacagacaccatccaatacactctg
gatgaggagagtgtgtgtgtagcagagctagatggagtgaggatcgtaggagggtccagg
catgagctgctgcaggaggtgccctcggcctgccaggacatctttaaaatcgcctccatg
gctcctggagctttactactggaggcacacaaggagtacgagaagtccagtcagaaggca
gatgagtacctgagagagataaaggaacagagtgtattgggggaagcggtgagacagtgt
gtggaggctgccggttatgaacatgaaccagagacccagaaaacactgctcagggctgcg
tcgtttgggaagtgttttctcagtaactacccaccagagccgtttgtcagtatgtgtcga
gatctgaaagttctcaactctgtccgagactacaccgtggggatccccctcacacacaca
cagtacaaacagatgactgttcaggtcctcattgacaggttggtgtaccgtaagctgtat
cccctggccattgagatctgtcgctatctgaagacaccggagtaccagggagtcagcaga
gttcttaagcactgggcctgctgcaaggtccagcagaaagaagagcctgatgagtccata
gcacatgctgtcagtgtgaagctgggtgaggcagcaggaatctcctactctgagatcgct
gccagagcatatgagtgtggcaggacggaactggccatcaagttgttggagtttgagcct
cgttctggggagcaggtccccctgctactgaagatgaagaggagtcaactggccctgagt
aaagctatagagagtggagacacagacctggtttacacggtggtgacatacctgaagaac
gagatgaacagaggagacttcttcatgacgctcagaaaccaaccggtagccctgagcctc
taccgacagttctgtaagcaccaggaacaggacacactgaaggatctgttcaaccaagac
gatgaccatcaggagctgggtaacttctacgtcaaggccagttacaaggagaagaagctg
gaggctcgcctgtctctgctgcagagtgctgtggacgagtacaacaaggccaggaacgag
tttgcagccaaggcgacagaggaggagatgaagctgctacggttccagaggcgtctggat
gaggagaagggagaggctctgctgggcctgtctctccaggagactctgcatgccctcctc
acctccaacttccacaagcaggctgaacagctctacagggacttcagggtgccagacaaa
aggtactggtggctgaagctgaccgctctggcagagaaggatgactgggaggagatggag
aaatttgccaagagcaagaagtcccccattggctatctagtatgttgtttatataacctt
tatacaaagccctttgtggaggtgtgtgtgaaacaacacaataagtacgaggccaaaaag
tatgtttccaaggtgaccccagagcaaaaggtcaaagcccacctggccataggtgatctg
gagggggcagccgaggcagctatagagaggaggagtgaaggagagatcagcactgtcctg
tcccgctgttctcccaccacagaccgagccctgctggagagactcaaccgagcaagatcc
actgctgccaaaaagtga
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