Salvelinus namaycush (lake trout): 120033442
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Entry
120033442 CDS
T07522
Name
(RefSeq) integrin beta-6-like
KO
K06589
integrin beta 6
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04518
Integrin signaling
snh04810
Regulation of actin cytoskeleton
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120033442
04518 Integrin signaling
120033442
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120033442
09142 Cell motility
04820 Cytoskeleton in muscle cells
120033442
04810 Regulation of actin cytoskeleton
120033442
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120033442
04515 Cell adhesion molecules [BR:
snh04515
]
120033442
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of epithelial cells
120033442
Cell adhesion molecules [BR:
snh04515
]
Integrins
Integrin beta subunits
120033442
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
EGF_integrin
I-EGF_1
EGF_2
EGF_TEN
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
120033442
NCBI-ProteinID:
XP_038835731
UniProt:
A0A8U0Q3Z0
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Position
Sna40:8177504..8189887
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AA seq
681 aa
AA seq
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MALKLRTGSEVTFQISVQQTEDYPVDIYYLMDLSASMIDDLEMIKDLGSTLSKEMAKLTS
KFRLGFGSFVEKPVLPFIKITPGELENPCRSVDESCLPTFGYKHVLPLTSSTEKFNNIIT
NQRVSANIDLPECGFDAIMQAAVCGDKIGWRNDSMRLLVFVSDADSHFGMDSKMSGIVVP
NDGECHLDSNNEYSMAAHLEYPTLGQLMDKLVDNNILLIFAVTENQKHNYENYAHFIPGA
TVGVLESDSRNILELIVTAYKELRSEIELEVLGDTEDLQISFTAICQDGTVLPGQKRCSN
VKAGDTVSFNVTVELSECLDGPQRFLIKPVGFQDPLEIDLESLCSCACHQTPEPNSSHCS
LGRGSLECGSCLCDPGYMGSKCECTEESVQSSNCKASGAPESCSGQGECFCGQCVCHPSS
FGRVYGAYCECDDFSCVRFRGVLCGGHGDCDCGECVCQSGWAGEYCNCSSSRDKCVSEDG
ALCSGRGKCVCGKCVCSMPGASGDTCERCPTCGDSCSSARTCVECHLQAEDEATEECVQR
CSVPHVFVNNSTEYDESRSTLCTLMSENNCFISFSVVAGDIGSTVYNLKMYDCPEPPNIA
MIVLGVSLSILTIGLILLGVWKLLISVHDRNEVAKFEAERAKAKWQSGTNPLFRSSTSTF
KNVTYKSAGGLKVDIHSMDGY
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggccctcaaactcagaactggcagtgaggtgactttccagatcagtgtgcagcagaca
gaggactaccctgtagacatctactacctgatggacctctcagcctccatgattgacgac
ctggagatgattaaagacttgggctccaccctgtccaaagagatggcaaagctcaccagt
aaattcagacttggattcgggtccttcgttgagaaaccagtcctcccgttcattaagatc
actcctggagagctggagaacccttgtaggagtgtggatgagagctgtctgccaacattt
ggatacaaacacgtcctacctctcaccagcagcacagagaagttcaacaatatcatcacc
aaccagcgtgtgtctgccaacatcgacctgccggagtgtggcttcgatgccattatgcag
gctgctgtctgtggagacaagataggctggaggaacgactccatgcgcctgctggtgttt
gtgagcgacgccgactctcactttgggatggacagcaagatgtcaggcatcgtcgtccct
aacgacggggagtgccatctggacagcaacaatgaatactctatggctgcccatctggaa
tacccaactctgggacagctgatggataaactggtggacaacaatatcttgcttatattc
gctgtgacggaaaatcagaaacacaactacgagaactatgcacatttcatacctggtgcc
actgtgggggttttggaatcagattcaaggaacatcctggaactgattgtgacggcgtat
aaagagctgcgctctgagatagagctggaggtactaggagacacggaggatctacagatc
tccttcacagcgatctgtcaggatggcacggtactacctggacagaaacgatgctccaat
gtcaaagctggagacacggtctccttcaacgtgactgtagaactctctgagtgtctcgac
ggtccccagcgtttcctcatcaaaccggtgggctttcaggaccccctggagatagacctg
gagtccctgtgctcctgtgcctgtcaccagacccccgaacccaacagcagccactgcagc
ctgggccgtggatctctggagtgtggctcctgtctgtgtgatccagggtacatgggttcc
aagtgtgagtgtacggaggagagcgtccagagcagtaactgcaaggccagtggcgctccg
gagtcctgtagcgggcaaggggagtgtttctgcggccagtgtgtgtgtcacccgtctagt
ttcggacgcgtctacggggcctactgcgagtgtgacgacttctcgtgtgtgaggttccga
ggggtcctctgtggaggtcacggggactgtgactgcggcgagtgtgtgtgtcagagcggc
tgggcgggggagtactgtaactgcagcagcagcagggacaagtgtgtgtcggaggacgga
gcgctgtgcagcggacgggggaagtgtgtgtgcgggaagtgtgtgtgttccatgcccgga
gcctctggagacacctgtgaaaggtgccctacctgtggagactcctgtagctctgctagg
acctgtgtggagtgtcatctacaagcagaagacgaggccacagaggagtgcgtccaaagg
tgcagcgtccctcacgtcttcgtcaacaattccacagaatacgacgagagccggtccacg
ctgtgtaccctaatgagtgagaacaactgcttcatctcgttcagtgtggtggctggagac
atagggagcactgtgtataatctaaagatgtacgactgtcctgagccccccaacatagct
atgatagtactgggggtctctctgtccatcctcaccatcggcctcatcctgctgggggtg
tggaagctgctgatctcagtccacgaccgcaatgaggtcgccaagtttgaggccgagagg
gcaaaggctaaatggcagtcgggtacaaaccctctgtttagaagctcgacatcaacgttt
aaaaatgtaacttataaaagcgcagggggactgaaagttgatattcattcaatggatggc
tactga
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