Salvelinus namaycush (lake trout): 120033444
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Entry
120033444 CDS
T07522
Name
(RefSeq) protein NLRC3-like isoform X1
KO
K22614
NLR family CARD domain-containing protein 3
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
snh04054
]
120033444
Pattern recognition receptors [BR:
snh04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
120033444
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
PRY
LRR_6
NOD2_WH
SPRY
LRR_4
zf-C3HC4_4
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_5
zf-RING_2
zf-RING_4
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
120033444
NCBI-ProteinID:
XP_038835735
UniProt:
A0A8U0Q334
LinkDB
All DBs
Position
Sna3:58066511..58084980
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AA seq
1185 aa
AA seq
DB search
MSVSWEREEGGTASPHTQRSESPVPSCLSMKSDRSMDNPPNFISGPMPLDSKGSNQNKRA
GSPVPSCLSMKSDWSMDHPASFKRGSTPFDQRTICNHGVQCVRGSRDQFSINCGHRFCRQ
CITRYQEQTGSSGDYGCPQCRKRSRTCPVLQQLNEPSDARGSEKMDDSLQRALKIHKTNL
KGRYGCVIEGIVKAGIQTPLNRIYTELYITEGESEEVNNEHEVWQLETTSRMPTSQDTAI
HCNDIFKPLPGQGRPIRTVLTMGIAGIGKTVSVQKFILDWAEGKANQDVDIIFVLPFREI
NLIKDEQYSILRLLNSFHTDLDIDDVKKLAGCKAMFIFDGLDESRLPLFFQHNEMVSDVT
QTSSVDVLLANLIKGNLLPSALLWITSRPAATHQIPPEYVDQVTEVRGFKDPQKEEYFRK
RFSDENLASRIISHIKTSRSLYIMCHMPVFCWISAIVLEYMLSTDKRKEMPKTLTEMFIH
FLLIQTNLKNQKYHGSDEMDQEELMESDKEVLLKLGKLAFEHLEKGNLMFYEEDLKECGI
DVKEASVYSGVCTEIFKEESVLSQRMVYCFVHLSIQEFFSAVYVYHCYTTNNMNALKSFW
TGVVSNEQSLEELLKSAVNKALESKNGHLDLFVRFLHGLSLESNQKLLRGLVRQTESSPE
SVQKTIQSLKVMQKKNISPERCINLFHCLIEMKDHSVQDEIQEFLRSEKRSQNLSLAHCS
ALVYILQMSEDVLDEFKLKTYTTSQEGRRRLLPAVRCCRKALLSGCGVTEEGYASLVSAL
RSKPSHLRELDLSYNCLGDSGVKLLTVGLKDPHCRLETMRLSGCWITEEGCASLASALSS
NPSHLREVNLSDNDLKDSGVNLLSGILGNLETLRLKQCRLTKTCCAMLVSALSSNSSHLR
ELDLCDNDLQDSGVKLLSSGLGNPHCKLETLRLSGCLITVEGCGFLASALKSNPSHLREL
DLRYNHPEDLGVRLLSAGLEDPHWKLEKLNVDHGKGGWLKSGLKKYACVITLDPNTAFKK
LSLSEENRKVTYGGEKQPYPDHPDRFNYWAQVLCREGLSGRCYWEAEWSGSEAVIGLTYR
GICRNGEITDFRLGRNDKSWSLECSSTSYSARHNSESTTAISVPSSSTHKVGVYLDWLAG
TLAFYSVSSDTLTHLHTFHATFTEPLYPGFKLWGSDSTVSLCQIK
NT seq
3558 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtctcttgggaaagagaggaggggggcactgccagcccccacacccagagatca
gagtctccagtacctagctgtttgtctatgaagagtgatcgctctatggacaatcctccg
aattttatcagtggaccaatgcccttggactcaaaaggctccaaccagaacaagagagca
gggtctccagtacccagctgcctgtccatgaagagtgattggtctatggatcatccagca
tctttcaaaagaggatcaacaccctttgaccaaaggactatctgtaatcatggtgtgcag
tgtgtgagggggtcaagggatcaattctctatcaactgtggacacaggttctgcagacag
tgcatcaccagataccaggagcagactggttcttctggagactatggctgtcctcagtgt
agaaagagatccagaacatgtccagtactacagcaactaaatgaacccagtgatgcaaga
ggctctgaaaagatggatgacagcctgcagagagctttaaagattcataaaaccaatctg
aaagggaggtatggatgtgtgatagaaggcatcgtaaaagcagggattcaaactcccctg
aacagaatttacacagagctctacatcacagaaggagagagtgaagaggttaacaatgaa
catgaggtgtggcagctagagacaacatccagaatgccaacctcacaggacacagcaatc
cactgcaatgacatcttcaaacccttacctggccaaggcagacccatcagaactgtgctg
acgatgggcatcgctggcattggaaaaactgtctctgtgcagaagttcatcctagactgg
gctgaagggaaggcaaaccaagatgtggatatcatatttgtgcttcctttccgggagata
aacttgattaaagatgaacagtacagtatactcagacttctaaacagcttccacacagat
ctagacatagatgatgtgaagaaacttgctggatgtaaagctatgttcatctttgatggt
ctggatgaaagcagacttccattgtttttccagcacaatgaaatggtgtctgatgtaaca
cagacatcgtctgtagatgtgctgctggcaaacctcatcaaagggaatctgcttccctct
gctcttctctggataacttcaagaccagcagcaacccatcagatcccccctgagtatgtt
gaccaggtgacagaggtacgagggttcaaggacccacagaaggaggagtacttcaggaag
agattcagtgatgagaacctggccagcagaatcatctcacacataaagacatcaaggagc
ctctacatcatgtgccacatgccagtcttctgctggatttctgcaatagtccttgagtac
atgttaagtacagacaagagaaaagagatgccaaagacactgactgagatgttcatacac
ttccttctcattcagaccaatctgaagaaccagaagtatcatggaagtgatgagatggat
caagaggagctcatggagtcggacaaggaagttcttctgaagctggggaaactggcattt
gaacatctggagaagggcaatctcatgttctatgaagaagaccttaaagagtgtggtatt
gatgtcaaagaggcctcagtgtactcaggagtgtgcacagaaatctttaaagaagagtct
gtgttgtctcagagaatggtgtactgctttgtccatctgagcattcaggagtttttctct
gctgtctatgtatatcattgttacacaaccaataacatgaatgcactgaagtccttctgg
actggagttgtttctaatgagcaatccttggaagagcttctgaagagtgctgttaataaa
gccttggagagcaagaatggacacctggatctttttgtccgcttccttcatggcctctct
ctggaatcaaatcagaaactcctacgaggtctggtaagacagacagagagcagtccagag
agcgtccagaaaaccatccaatcccttaaggtgatgcagaagaagaacatctcccctgaa
aggtgcatcaatcttttccactgtttgatagagatgaaagaccattcagtacaggatgaa
atccaagagttcttgaggtcagagaagagatcccaaaacctctcacttgcacactgttca
gcgctggtctacatactgcaaatgtcagaggacgttctcgatgagtttaaactgaagacg
tacaccacgtcacaagagggacgtaggagactgctcccagctgtgaggtgctgcagaaaa
gctctgttgtcaggctgtggagtcacagaggaaggctatgcttctttggtctcagctctg
aggtcaaaaccgtcacacttgagagagctggatctgagctacaattgtctaggagactcc
ggagtgaaactactcactgttggtctgaaggatccacattgtagactggagacaatgagg
ctgtcaggctgttggatcacagaggaaggctgtgcttctctggcctcagctctgagttca
aacccctcacacctgagagaggttaatctgagtgacaatgacctgaaggattcaggagtg
aatctgctttctggtatactggggaatctggagacactgagactaaaacaatgcagatta
acaaagacatgctgtgcaatgctggtatcagctctcagctcaaactcttcacacctgaga
gagctggacctgtgtgacaatgaccttcaggattcaggagtgaaattactctcttctgga
ctgggaaatcctcactgtaaactggagactctgaggctgtcaggctgtctgatcacagtg
gaaggctgtggttttctggcatcagctctgaagtcaaacccctcacacctaagagagctg
gatcttcggtacaatcacccagaagacttgggagtgcgactgctctctgctggacttgag
gatccgcactggaaactggagaaactcaatgtggaccatggtaaagggggttggttgaaa
tcagggctgaaaaaatatgcctgtgtaatcacactggacccaaacacagcattcaaaaaa
ctatctctgtccgaggagaacagaaaggtgacatatgggggagagaagcaaccgtatcct
gatcacccagatagatttaattactgggcacaggtgctgtgtagagagggtctgtctggg
cgctgttactgggaggcagagtggagtggtagtgaggctgttataggactgacatataga
ggaatctgcaggaatggagagattactgactttaggcttggacgcaatgacaagtcctgg
agtctggaatgctctagtaccagttactctgccagacacaatagtgagagcactactgcc
atatctgtcccttcctccagcactcacaaagtaggagtgtatctggactggctggccggc
actctggccttctacagtgtctcttctgacacactgacccacctgcatacctttcatgcc
actttcactgagcccctctatccagggtttaagctttggggttctgactccacagtgtcc
ctgtgccagataaaatag
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