Salvelinus namaycush (lake trout): 120033586
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Entry
120033586 CDS
T07522
Name
(RefSeq) POU domain, class 2, transcription factor 1-like
KO
K09364
POU domain transcription factor, class 2
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120033586
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120033586
03021 Transcription machinery [BR:
snh03021
]
120033586
Transcription factors [BR:
snh03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain POU
120033586
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
Octamer transcription factors
120033586
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POU2F1_C
Pou
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
120033586
NCBI-ProteinID:
XP_038835926
UniProt:
A0A8U0Q4B9
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All DBs
Position
Sna40:complement(18843245..18857180)
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AA seq
621 aa
AA seq
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MADGGVMSQYESSGPDSIINLSVSSKSTMENGDVVKGVLTNGRDSQKQTVMSLTNAQSQA
LLQQLTLSPAQQQLFLQQAQAQLLAAAVQQHSASQAQNSSTTGAAISASAATPITTQLPL
SQPIHITPLQQQGLQQFVLVQPGHSMATQLQPQFFISQTPQGQPNLLQAQNLLTQLPQSQ
ANLLQSPTITIAPQPAAPTRTITATPGQLLIHSQTPPPKGLGTPTLEDANDLEELEIFSK
AFKQRRIRLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDA
ENVSSESSPSLSPLGSGHGSPSLASDLNSRRRKKRTSIDTNIRVALEKSFLQQNQKPSSD
EVSLIADQLNMEKEVIRVWFCNRRQKEKRINPPSSSAFQKSIFSSPTTASLVNTVPQTTV
TVTPSLPVTSFSFTDRTLASATGNTASVISSTPTVPSMSLTPSSSVTTMSQPAVTMTQAG
QMLYSNGGGLAAMAAAAAGISPSLMPSSQFNTGGALLNLTTAGFGGALATIQALASSGSF
PITTLDGNGNLLFANTSMSGSAPSMVNTPLFLNPQSLSLLGSNPVSFIPASALSLQLTAG
TNTITTATTPVNTIVRASKAQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atggctgacggaggagtaatgagccaatatgaaagttcaggaccagactcgataatcaac
ctgtcagtgtccagtaaaagcaccatggagaacggggacgtagtcaaaggcgtgctgacc
aatggccgggactctcagaagcagactgtcatgtccctcaccaacgcacagtcacaggct
ctgctgcaacagttgaccttgtctccagcgcagcagcagctgtttctccagcaggctcag
gcccagctccttgcagcagccgttcagcagcactccgccagccaggcccagaacagcagc
accacgggggccgccatctctgcctccgcagccacccccatcaccacccaactcccactg
tcccagcctatacacatcactcctctccagcagcagggcctgcagcagtttgtgttggtc
cagccaggtcattccatggccacccagctacagcctcagttcttcatctcccagactcca
cagggacagcccaatctcctgcaagcccaaaatcttctcactcaactacctcagagccaa
gccaacctcctacagtctccaactatcacaatcgccccacagccggccgctcccacgcgg
accataactgccacccccggccagctcctcatccacagccagaccccgccccctaagggt
ctgggcacgcccactctggaggacgccaatgatctggaggagctggagattttctccaag
gccttcaaacagaggaggatcagactgggcttcacacagggtgacgtggggctggccatg
gggaagctgtatggtaatgacttcagccagaccaccatctcccgctttgaagcactcaac
ctgagcttcaagaacatgtgtaagctgaaaccgctgctggagaagtggctcaacgacgca
gagaatgtgagctcagagtccagccccagcctcagtcccctgggctctggtcacgggtca
cccagcctggcgtctgacctcaatagccggcgccgcaagaagaggaccagcatcgacacc
aacatccgtgtggccctggagaagagcttcctccagcaaaaccagaagccgtcgtcagac
gaggtctccctgatagcagaccagctgaacatggagaaggaggtgatccgggtgtggttc
tgtaaccgccggcagaaggagaagaggatcaaccctcccagcagctcagctttccagaag
tccatcttctcgtcccctactactgccagcttggtgaacactgtaccccagaccactgtg
accgtcaccccctctctgcctgtcaccagcttcagcttcacagacaggaccctggcgtca
gccaccggcaacacagcatccgtcatctccagcacccctacagtcccctctatgtccctc
acaccctcctcctctgtgacaaccatgtcacagccagccgttaccatgacgcaggcgggg
cagatgctctacagcaacggcgggggtctggctgcaatggcggctgcagcggcgggaatc
agcccgagtctcatgccctcatcgcagttcaacacagggggggccttactgaacctaacc
actgcaggttttggaggagcgctagccaccatccaagctctggcctccagcgggtccttc
cccatcaccaccctggacgggaacgggaacctgctattcgctaacaccagcatgtctggc
tccgcccccagcatggtgaacacgcccctcttcctgaacccccagagcctgtccttattg
ggtagtaaccctgtcagcttcatccccgccagtgccctcagcctgcaactcacagctggc
accaacaccatcaccacggcaaccacaccagtcaacaccatcgtcagagcatctaaggcc
caatga
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