Salvelinus namaycush (lake trout): 120033629
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Entry
120033629 CDS
T07522
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
snh03000
]
120033629
Transcription factors [BR:
snh03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
120033629
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
120033629
NCBI-ProteinID:
XP_038835990
UniProt:
A0A8U0Q3K7
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Position
Sna40:complement(17329978..17330997)
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AA seq
339 aa
AA seq
DB search
MYSMMMETDLHSPDPQTNTNSGHTGGSNNGNKVNQDRVKRPMNAFMVWSRGQRRKMAQEN
PKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKD
KYSLAGGLLTGTGGGGVGLGMSPGVGQRLDSPGGHGGASAASYAHMNGWTNGAYSGQVAA
AAAAAAMMQEAQLAYSQHPGSGHHHHSHHHHPHNPQPMHRYDMSALQYSPISNSQSYMSA
SPSGYGGITYTQHQSSGVASSGSMGTLGSLVKSEPSVSPPVSTHSRAPCPGDLRDMISMY
LPTGEAAGDPSVQSRLHALPQHYQSSTTGVNGTVPLTHI
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgtatagtatgatgatggagactgacctacactccccagatccccaaacgaacacgaat
tcggggcacacgggaggatcaaacaatgggaacaaagtcaaccaagaccgcgtaaagaga
ccgatgaatgccttcatggtttggtcccggggccagcggcgaaagatggctcaggagaac
cccaaaatgcacaactccgagatcagcaagcggctcggcgccgagtggaaggtgatgtcc
gaggcggagaagagacccttcatcgacgaggcgaagcggctacgagctatgcacatgaag
gagcatccggattataaatacagaccgagacggaagaccaagacactgttaaaaaaggac
aaatactctttggccggtgggctgcttaccgggacagggggtgggggtgtcggtctaggg
atgagccctggggtcggacagaggttagacagtcccgggggtcacggcggtgcgtctgct
gccagctacgcgcacatgaacggctggacgaacggtgcgtactcggggcaggtggctgca
gctgcggcggccgcggccatgatgcaggaggctcagctcgcctacagccagcacccgggc
agcgggcaccaccaccactcacaccaccatcacccgcacaacccccagcccatgcaccgc
tacgacatgtccgccctccagtacagccccatctcgaactctcaaagctacatgagcgcc
tctccgtccggctacggcgggatcacctacacgcagcaccagagctctggtgtcgcctcg
tccgggtcaatgggcacgctgggctctctggtgaaatcggaaccgagtgtgagccctccc
gtctctactcactcgcgcgccccgtgtcccggggacttgagggacatgataagcatgtat
ttaccgacgggggaagctgcaggtgacccgtccgttcaaagtagacttcacgcgctgccg
cagcactaccagagctccacgacaggggtaaacggaactgttccattgacacatatttag
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