Salvelinus namaycush (lake trout): 120033917
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Entry
120033917 CDS
T07522
Name
(RefSeq) transcription activator BRG1-like isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120033917
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120033917
03036 Chromosome and associated proteins [BR:
snh03036
]
120033917
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120033917
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
120033917
Chromatin remodeling factors
BAF complex
120033917
PBAF complex
120033917
GBAF(ncBAF) complex
120033917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
120033917
NCBI-ProteinID:
XP_038836236
UniProt:
A0A8U0U273
LinkDB
All DBs
Position
41:complement(14165642..14186355)
Genome browser
AA seq
1633 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMMGPSPSPGSAHSMMGPSPGPPASGHSHPQQGPS
VYPQENMHQMHKPMEGMHEKGMSDDPRYGPMKSMGMRPGGGHIGMGPPPSPMDQHSQGYP
SPLGGSEHSPSPVPANGPPPGPMMPSGPGVPMEGGDPQAMGQQNRVGVPGPSGGSGPGGP
TPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPGMQQQPGMPNMHPSSGPG
AGPGQPPANYNRPHGMVGPNLPPPGPSGVPPGMQGQPTNGPPKQWPEGPMVNAAAPSSAP
QKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPPQPPPMVLHQKQNRITPIQKPRG
LDPVEILQEREYRLQARITHRIQELEHLPGSLAGDLRTKANIELKALRLLNFQRQLRQEV
VVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSIL
QHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRK
LIDQKKDKRLAYLLQQTDEYVANLTDLVRAHKADQALKDKKKKKKKKKKKKPESGEGQPP
ALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGLDAPRAGQLDTWLEMNPGYEVAPRSDS
EDSGSEEEEEEEEEPQPSQAPTEEKKKIPDPDTEDVNEVDVRYIIEGAKQDVDDEYNSAE
AAFARGLQSYYAVAHAVTETVDKQSTLLVNGQLKTYQIKGLEWLVSLYNNNLNGILADEM
GLGKTIQTIGLITYLMEHKRINGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYKGSPQAR
RAFLPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTVVLNTHY
LAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNAPFAMTGEKVDLNEEET
ILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDG
SEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFTGGVVSGPDLYRAAGK
FELLDRILPKLMVTDHKVLLFCQMTSTMTIMEDYFGWRNFKYLRLDGTTKAEDRGMLLKT
FNDPASQYFVFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQRNEVRV
LRLCTVQSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDEVGA
PGGWRAGGALEEDEVPDDETVNQMIARSEEEFDQFMRMDLDRRREDARNPKRKPRLMEDD
ELPTWIIKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEDGNLEDLE
EEVRHKKTTRKRKRDRDDMPGPATPSSSGGGGGRSRDKDEEVKKAKKRGRPPAEKLSPNP
PSLTKKMKKVVDTVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIR
SHKYRSLNDLEKDVMLLCSNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEKEEESEGE
DSEEEEEEEVDEGSESESRSVKVKIKLGRKEKEGRGKGQRRRGRGSRAKPVVSDDDSEEE
QEEVGSASGSEEN
NT seq
4902 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccagacccccccatgggagggacgcctcggccgggcccctccccaggaccg
gggccttctccaggagcaatgatgggccccagcccttccccgggctctgctcatagcatg
atgggacccagcccaggtcccccagcctctgggcactcccacccacaacaggggccctca
gtatatcctcaggagaatatgcatcagatgcacaaacctatggaaggcatgcatgagaag
ggcatgtctgatgaccctcgctatggaccgatgaagagcatgggcatgagaccaggtgga
ggccatattgggatgggaccccctcctagccccatggaccaacattcccaaggctacccc
tctccactggggggttctgagcactctcccagccctgtgccagccaacggccctcccccc
ggccccatgatgccctctggcccaggtgtccccatggagggcggtgacccccaggccatg
ggccagcagaaccgcgttggggtcccaggtccaagtggtggttctgggccaggcggaccc
acccccttcaaccaaaaccagctgcaccagctcagggcccagatcatggcctacaagatg
ctggctcgcagccagcccctgccagaccacctgcaaatggccgtgcagggcaagaggccc
atgccagggatgcagcagcagccagggatgcccaacatgcacccttcctctgggcctggg
gcggggcctggacagccaccagcaaactacaacagacctcatggaatggtaggcccgaac
ctgcctcctccaggaccctcaggtgttccccctggtatgcagggacagcccaccaatgga
ccccctaaacaatggcccgaagggcccatggtgaatgctgctgctccatccagtgccccc
cagaagctgattccccctcagcccactgggagaccctcccctgctcccccctccgtgccc
cctgctgcctcgccggtcatgcccccccagacccagtcccctgggcagcccccccagccc
ccacccatggtgctacaccagaaacagaaccgcatcacgcccatccagaagccccgtggt
ctggacccagtggagatactccaggagagagagtacaggctgcaggctcgtatcacccac
cgtatccaggagctggagcatctaccagggtctctggccggagacctgcgcaccaaagcc
aacatcgagctcaaggccctgaggctgctcaatttccagagacagctgcgtcaggaggta
gtggtgtgtatgcgtcgtgacacggccctggagacggccctcaacgctaaggcctacaag
cgtagcaagcgccagtccctccgcgaagcccgcatcacagagaaactggagaagcaacag
aagattgaacaggagcgtaaacgacgccagaaacaccaggaataccttaacagcatcctg
cagcatgctaaagacttcaaggagtaccaccgctccatcacagccaagctccagaaggcc
accaaagctgtggccacgtaccatgccaacactgagcgcgagcagaagaaggagaacgag
cgcattgagaaggagagaatgaggaggctgatggctgaagatgaggagggctaccgtaag
ctcattgaccagaagaaagacaagcgtctggcctacctgctgcagcagacagacgagtac
gtggccaacctcaccgatctggtcagagctcacaaggctgatcaggccctcaaggacaag
aagaagaagaaaaagaaaaagaagaagaagaagccagagagtggggagggccagcctcct
gccctgggacccgacggagagcctctggatgagaccagtcagatgagtgacctgcctgtg
aaggtgatccatgtagatagtgggaagatcctgacagggctggacgcgccccgggctggc
cagctggacacctggctggagatgaaccctgggtatgaagtggctcctcgttcagacagc
gaggacagtggctcagaggaagaggaggaggaagaggaggagccccagccctcccaggct
cctaccgaggagaaaaagaagatcccagaccccgacacagaggacgtgaacgaggtcgac
gtccgctacatcatcgagggagccaagcaggatgtggatgatgagtataacagtgccgag
gcggcgttcgcccgaggcctgcagtcttactacgctgtggcccacgccgtcactgagacg
gtggacaaacagtccacactgctggtcaacgggcagctcaaaacttaccagatcaagggc
ttggagtggctggtgtctctgtacaataacaacctgaacgggatcctggctgatgagatg
ggtctgggcaagaccatccagaccatcggcctcatcacctacctcatggagcacaagcgc
atcaacggccccttcctcatcatcgtgcccctctcaactctgtccaactgggtgtatgag
tttgataagtgggctccatctgtggtgaaagtctcttacaaaggctccccacaagctcgc
cgggcattcctccccatcctgcgcagcggcaagttcaacgtactgctcaccacctacgag
tacatcatcaaagacaagcaagtgctggctaagctgcgatggaagtacatgatagtggac
gagggccaccgtatgaaaaaccaccactgtaagctgactgtggttctgaacacccactac
ctggccccgcggcgtctgctgctgaccggcaccccgctgcagaacaagctgccggagctt
tgggccctgctcaacttcctgctgccgaccatcttcaagtcctgcacaaccttcgagcag
tggttcaacgcccccttcgccatgaccggagagaaggtggatctgaacgaggaagagacc
atcctgattatccgtcgtttgcacaaagtgctccgccccttcctgctgcgcagactgaaa
aaggaagtggagtcccagctgcctgagaaggtggagtatgtgatcaagtgtgacatgtcg
gccctgcagagagtgctgtacagacacatgcaggctaagggtgtgctgctcaccgacggc
tctgagaaagacaagaagggtaaaggaggcaccaagaccctgatgaacaccatcatgcag
ctgaggaagatctgtaaccatccctacatgttccagcagatcgaggagtccttctctgag
catttgggattcactggaggcgtagtgtctggacctgacctgtaccgcgccgctgggaag
tttgagctgctagaccgtatcctgcccaagctgatggtcaccgaccacaaggtcctgctc
ttctgtcagatgacttccaccatgaccatcatggaggactactttggctggcgcaacttt
aagtacctgcgtctggacggaaccactaaggctgaggatcgtgggatgcttttgaagacc
ttcaatgaccccgcctctcagtactttgtgttcctgctcagcaccagggccggcgggctg
ggcctcaaccttcagtctgctgacactgtggtcatctttgactccgactggaacccacat
caggacctgcaggcccaggacagagcccaccgtatcgggcagcggaacgaggtgcgtgtg
ttgcgtctctgcaccgttcaaagtgtggaggagaagatcctggcggctgccaagtacaag
ctgaacgtggaccagaaggtcatccaggccggcatgttcgaccagaagtcgtcgagtcat
gagcgtcgtgccttcctgcaggccatactggagcatgaggaacaggacgaggtcggggcc
ccggggggctggcgcgctggaggggcgttggaggaggacgaggtgcctgatgatgagacc
gtcaaccagatgattgccaggagcgaggaggagtttgaccagttcatgcgtatggacctg
gaccggcgccgtgaggatgcccgcaaccccaagagaaagccccgtctgatggaggatgac
gagctacccacctggatcataaaggatgatgccgaggtggagaggctcacctgtgaggag
gaggaggagaagatgtttggtcgcggctctcgccagcgcaaggaggtggactacagcgac
tcactcacagagaagcagtggctcaaggccatagaggacggtaatctggaggacctcgag
gaggaggtgcgtcacaagaagacgacccggaagcgcaagcgagaccgtgacgacatgccc
ggcccggccacgcccagctccagcggtggtggtggtggtcgcagccgtgacaaggacgag
gaggtcaagaaggccaagaaacgcgggcgccctccggctgaaaaactgtcccctaacccc
ccatccctcaccaagaagatgaagaaagtggtggacactgtcatcaagtacaaggacggc
agcaatgggcgccagctgagtgaagtcttcatccagctgccatcccgcaaggagctgcct
gagtactacgagctcatccgcaagcctgtcgacttcaggaagattaaggagaggatccgc
agccataagtaccgcagcctgaatgacctggagaaggatgtgatgctgctgtgtagtaac
gctcagaccttcaacctggagggctctctgatctatgaggactccatcgtactgcagtca
gtcttcaccagcgtcaggcagaagattgaaaaggagaaggaggaggagagtgagggagag
gacagtgaggaggaagaagaggaggaggtggacgaaggctctgagtctgaatctcgttca
gtgaaggtgaagattaagctggggaggaaggagaaggagggcagagggaagggccagcgc
cggaggggccgtggctcccgggccaaacctgtagtgagcgacgacgacagcgaggaggaa
caggaggaggtgggttcggccagcggcagtgaggagaactga
DBGET
integrated database retrieval system
