Salvelinus namaycush (lake trout): 120034098
Help
Entry
120034098 CDS
T07522
Name
(RefSeq) probable E3 ubiquitin-protein ligase MGRN1 isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04120
Ubiquitin mediated proteolysis
snh04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
120034098
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
120034098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120034098
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120034098
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120034098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-RING_5
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
120034098
NCBI-ProteinID:
XP_038836460
UniProt:
A0A8U0Q4D5
LinkDB
All DBs
Position
Sna41:9353318..9362115
Genome browser
AA seq
548 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAHHEPVKTLRSLVNIRKDSLRLVRYKDDTDAPVEEGGKPKVLYGV
EFTFDADARVAITLYCQAFEEFTNGMAMYNPKGPALVSETVHYKRGVSQHFSLPSFKIDF
TDWKEEDLNFELDRGVFPMVIQAVVDEGDDCFGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSEDENSDNSNECVVCLSDLRDTIILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGPLSPVSFSPVLAQTMDHDEHSSSDSVPP
GFEPISLLEALNGLHSVSPSIPPAPLYDDINFSGSLVGEGRPLGSPEHSGDGGLQKGKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHTLLSSSPAPTEATAAEDVPESISPDDEDR
LHSGGEREILQDYSSEHSSLTKTESDPPGDLSLPGSSESLKSQSTNCSSQPLLCPPSSLH
MEDEQLDP
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgattcttagccggagaatcgctggcgttgaggatattgatatccaggcgaat
tctgcgtacagatttccaccgaaatcggggaattactttgccagccattttttcatggga
ggggagaaatttgacactccccatccagagggttacctatttggagaaaacatggatctg
aacttccttggaaataggcctgtacaatttccgtacgtgaccccggcacaccatgagcct
gtgaagaccctgagaagtctggtcaatatcagaaaggactccctgcgcttggtcaggtac
aaagatgacactgatgctccagtagaggaaggagggaagccaaaggttctgtatggtgtg
gagttcacatttgacgctgatgctcgtgtggctatcaccctgtattgccaagcttttgag
gaattcaccaatgggatggcaatgtacaacccaaagggcccagccctggtttctgagact
gtacactataagaggggtgtgagccaacatttctccctgccttctttcaaaatcgatttc
accgactggaaggaggaggatctgaactttgagctggaccggggtgttttccccatggtg
atccaagctgtggtggatgaaggggatgattgctttggacatgcacatgtgctgctggca
gcctttgagcgacatgtggatggcagtttctccgtcaagcctctgaagcagaagcaaatt
gtggatcgtgtgagctacctgctgcaggagatctatggaattgaaaacaaaaacaaccaa
gagaccaagccatcggaggatgagaacagtgacaacagcaatgagtgtgttgtttgtctg
tcagacctccgagacaccatcattctgccctgcagacacctgtgtctctgcaactcctgt
gctgacaccctgcgttaccaggccaacaactgtcctatctgcagactgcccttccgagcc
ttgctgcagatcagagctgtgaggaagaagcctgggccgctgtcccctgtgtcgttcagc
cctgtactggctcagaccatggaccatgatgagcactcgagctcagactcggttcctcca
ggttttgagcccatctctctgctggaggctctgaacggcctgcactctgtgtccccctcc
atcccccccgcccccctctacgatgatattaacttctctgggagcctggtaggggagggc
cggccgctgggctccccagaacattccggggacgggggcctgcagaagggcaaagtcagc
aagtcacctgacagcaccctgaggtcgccctcatcacccatccaggaggaggatgaggag
aagctgtctgagatgtcggacgcccagcctcacacactgctctccagcagcccagctccc
accgaggccactgcagccgaggatgtaccggagtccatctccccagatgatgaggacagg
ctgcactctggaggagagagagagatccttcaggactacagcagtgaacacagcagcctg
accaaaacagagagtgacccgccaggggacctgtctctgccagggtcatcagagagcctg
aagagtcagagtaccaactgctccagccagcccctcctgtgtccccccagcagccttcac
atggaggatgagcaacttgacccctaa
DBGET
integrated database retrieval system
