Salvelinus namaycush (lake trout): 120034177
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Entry
120034177 CDS
T07522
Name
(RefSeq) U3 small nucleolar RNA-associated protein 18 homolog
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
120034177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
snh03009
]
120034177
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
120034177
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
WD40
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_NUP159_NUP214
NBCH_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_TEP1_2nd
Beta-prop_Vps41
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_NOL10_N
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Pox_D5
Beta-prop_IFT140_1st
Beta-prop_VPS8
KNTC1_N
Beta-prop_IFT140_2nd
Beta-prop_LRRK2
WD40_like
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
120034177
NCBI-ProteinID:
XP_038836569
UniProt:
A0A8U0Q753
LinkDB
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Position
Sna41:4604158..4618085
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AA seq
522 aa
AA seq
DB search
MDKVGKHSRKGKKTTKRVSEPEPDYEKEVLKRRKNAKAVTVLGEEDASVKLLEDLVFGAE
DDLVERLVEDREDGGATLLDDDDSSDSDVENEARLKVQPTRTAVWEDEDDDLEEEVDMTQ
RFRRDLTKSDAEAKMSKQKLQQRMKEQFQKAMGGMPSWAETKVKKKNKKKDDSDDEDEDG
DDLMRKTGNFVGSSDSLPKGIIRMKKCLHANNDRPSVDRLTTVQFHPSAQVVMTAGIDQS
ISLFQVDGKTNPKIQSIYLEKFPVHKAQFSVDGEQVVATSFRNKLFYIYDMMEGKVIPVH
AVRGLREQRVKEFEVSPDGESLLLTGTSGYLHVLTMKTKEVVKSMKINGNIAGVAFSQDG
SKVFTNSEEGEVYIWDMRSSKCLNSFTDDGCVSGTSMAASKNGQYLACGSAAGVVNVYSQ
EECMRQNNPKPLKTIMNLVTSATSLRFNPTTEILAIASRADDEAARLVHIPSFTVFSNFP
IFQRKTIYRAHRLDFSPNSGFFSLANNKGHAPLFRLLHYKDF
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atggacaaagtcggtaaacactctagaaaggggaaaaagacgacgaagagagtctctgaa
ccagagcctgactacgagaaagaagtgctaaaaagacgcaaaaacgccaaggcagtgact
gttttgggcgaagaagatgcatctgtaaaacttcttgaagatcttgtttttggtgctgaa
gatgatcttgtggaaaggctcgtggaggacagagaggatggaggtgccacacttctggat
gatgacgattccagcgattccgatgtagagaatgaagcacggctgaaggttcagccaaca
aggacagcagtatgggaggatgaggatgatgatctggaggaagaagtggacatgacacaa
cggttccgtagagacctgactaagagtgacgcagaggccaagatgtccaaacagaagtta
cagcagaggatgaaagaacagttccaaaaagcaatgggtggaatgccgtcctgggcagag
acaaaagtcaagaaaaagaataagaaaaaagatgactctgatgatgaggatgaagatgga
gacgacctgatgaggaagacgggcaactttgtgggctcatccgacagcctccccaaagga
atcatacggatgaagaagtgcctacacgccaacaacgaccgcccgtctgtggacaggctg
accacggtgcagttccacccctctgcccaggttgtcatgacagcagggatcgaccagtcc
atctctctgttccaggttgatgggaagaccaaccctaagattcagagtatttacctggag
aagttcccggtgcacaaggcccagttcagcgtggacggggagcaggtggtggccaccagt
ttcaggaacaagctgttctacatctacgacatgatggagggcaaggtcatccctgtccac
gctgtcagaggtctgagggaacagagggtgaaagagtttgaagtctcccctgatggagaa
tccctccttctcactggcacctccggatacctccatgtgttaacaatgaagacaaaggag
gtagtgaaaagcatgaaaatcaacggaaacattgcgggagtggctttttcccaagacggc
agcaaagtcttcaccaattctgaggagggtgaggtgtacatatgggacatgaggagcagt
aaatgcctgaacagcttcacagatgatggctgtgtgagtgggacctccatggctgcatcc
aagaacggacagtatctggcctgcgggtcagcggcaggtgtggtgaacgtgtactcccag
gaggagtgtatgcggcagaacaaccccaagcctctgaagaccatcatgaacctggtgacc
tctgccacctctctccgcttcaaccccaccaccgagatcctggccattgcctccagggct
gacgacgaggctgcccgattggttcatatccccagcttcacggtgttctccaacttcccc
atattccagaggaaaaccatatacagggcccaccgcctggacttctccccgaacagcggc
ttcttctccctggccaacaacaagggccatgcccctctcttcaggttgttgcattacaaa
gacttttga
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