Salvelinus namaycush (lake trout): 120034213
Help
Entry
120034213 CDS
T07522
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120034213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120034213
03041 Spliceosome [BR:
snh03041
]
120034213
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
120034213
Spliceosome [BR:
snh03041
]
Complex B
Other components
Prp19-related factors
120034213
Complex C
120034213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_2
TPR_12
TPR_8
Suf
TPR_16
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
SNAP
Motif
Other DBs
NCBI-GeneID:
120034213
NCBI-ProteinID:
XP_038836615
UniProt:
A0A8U0U295
LinkDB
All DBs
Position
Sna3:complement(61265356..61283405)
Genome browser
AA seq
753 aa
AA seq
DB search
MHKMPRIWLDYCQFLVAQCKITRSRRTFDRALRALPVTQHPRIWPLYLRFARNLPLPETA
IRVYRRYLKLSPENAEEYIDYLRSCSKLDEAAVRLAAVVNDESFVSKEGKSNYQLWHELC
DLISQNPDKVNSLNVGAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILT
VVTVRDFTQVFDSYAQFEESMIAAKMETTSEMGKDEEENIDLELRLARFEQLIARRPLLL
NSVLLRQNPHNVHEWHKRVKLYEGKPRQIINTYTEAVQTVDPMKATGKPSSLWVSFAKFY
EENEQLDDARTIFEKATKVNYKQVDDLAGVWCEYGEMELRHENYEQALRILRKATAIPSK
KAEYFDVSEPVQNRVYKSLKVWSMLADLEESMGTFQSTKAVYDRIIDLRIATPQIIINYA
MFLEEHNYFEESFKAYERGIALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALD
GCPAKFAKTIYLLYAKLEEEFGLARHAMAVYERATQAVDNTERHHMFNIYIKRAAEIYGV
TYTRAIYQKAIEVLPDEHSRDMCLRFADMESKLGEIDRGRAIYSYCSQICDPRMTATFWQ
TWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMMKATTNATGTISDLAPGQMG
LDDMKLLEQQAQLLAAEAEQDKPKLKEKILFVRSDTSRSELAELAKQANPDEIDIDIDID
DEDEDEDQGPEEVQLEQKTVPTAVFGGLKEGED
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgcacaagatgccgaggatctggctggactactgccagttcctggtagctcagtgtaag
atcaccaggagcagacgcacgtttgaccgagcactccgagccctgcccgtcactcagcac
cctcgcatctggcccctgtacctccgctttgcccggaacctgcccctgcctgagaccgcc
atccgtgtctatcgcaggtacctcaagctgtccccagagaatgcagaggagtacatagat
tacctgcgttcctgcagcaagctggatgaagcagcggtgcgtctggcagccgttgtcaac
gatgagagctttgtgtccaaagagggcaagtctaactaccagctatggcacgagctgtgt
gacctgatctctcagaacccagacaaggtgaactctctgaatgttggggccatcatccgt
ggaggcctcactcgtttcacagaccagctgggcaaactctggtgctccctggctgactac
tacattcgcagtggacattttgaaaaggctcgtgatgtgtatgaggaggccatcttgacg
gtggtgacggtgagagatttcacccaggtgttcgacagctacgcccagtttgaggagagc
atgatcgctgccaagatggagactacctccgagatggggaaagatgaagaagagaacata
gacctggagctgcgtctggcccgctttgagcagctgatcgcccgcaggcccctcctgctg
aacagtgtgctgctgagacagaacccccacaacgtccacgagtggcataagagggtcaaa
ctgtacgaggggaaaccacgacagatcatcaacacctacacagaggcagttcagactgta
gaccctatgaaggctacagggaaacccagctctctctgggtctccttcgccaagttctat
gaggagaacgagcagctagacgacgcgcggaccatctttgagaaagccaccaaggtgaac
tacaagcaggttgacgacctggctggcgtgtggtgtgaatacggagagatggagctacgc
catgagaactacgaacaggcgctacgtatactgaggaaagcaactgccatcccgtccaag
aaggcggagtactttgacgtgtcagagccggtgcagaacagagtgtacaagtctctgaag
gtctggtccatgctggctgacctggaggagagtatgggaaccttccagtccaccaaggcg
gtgtacgaccgcatcattgacctgcgcatagccacaccccagataatcatcaactacgcc
atgttcctggaggagcacaactactttgaggagagcttcaaggcgtacgagcgcggcatc
gccctcttcaggtggcccaacgtctatgacatctggaacacctacctcaccaagttcatc
gaccgctacgggggcaagaagctggagagggcccgggacctgtttgagcaggcgctggat
ggctgtccagccaagttcgcgaagaccatctacctgctgtacgccaaactggaggaggag
tttgggttggcgcgtcatgccatggcggtgtacgaaagagccacgcaggcggtggacaac
acggagaggcatcacatgttcaacatctacatcaagagggctgcagagatctacggcgtc
acctacaccagagctatctaccagaaagccatcgaggtgcttccagacgaacactccagg
gacatgtgtctgcgcttcgctgacatggagagcaaactgggcgagatcgaccggggacga
gccatatactcctactgctctcagatctgtgacccaaggatgacggctacgttctggcag
acatggaaggagtttgagatccgccatgggaatgaagacactatccgggagatgctgagg
atcaagcgcagcgtccaggccacgtataacacacaggtcaacttcatgtcctcacagatg
atgaaggccaccaccaacgccaccggcaccatctcagatcttgccccgggccagatgggg
ctggatgatatgaaactgttggagcagcaggcccaactgctggccgccgaggctgaacag
gacaaacccaaactcaaagagaagatcctcttcgtcaggagtgacacgtcacgcagcgag
ctggctgaactggccaaacaagccaaccctgatgagattgatattgatattgatattgat
gatgaggatgaggatgaagaccagggcccagaggaggtgcagttggaacagaagaccgtc
cccaccgctgtctttggagggctgaaagaaggagaagattga
DBGET
integrated database retrieval system
