Salvelinus namaycush (lake trout): 120034427
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Entry
120034427 CDS
T07522
Name
(RefSeq) general transcription factor IIF subunit 1-like isoform X1
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
120034427
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120034427
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
120034427
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TFIIF_alpha
Motif
Other DBs
NCBI-GeneID:
120034427
NCBI-ProteinID:
XP_038836906
UniProt:
A0A8U0Q355
LinkDB
All DBs
Position
41:complement(19531124..19543999)
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AA seq
539 aa
AA seq
DB search
MASLGGSSSSSTEYIVRVPKNTSKKYSIMAFNSGDKVNCSSWTQARMERDMSNRRMYGVE
ETEEGAAGSEFGKKQREEARRKKFGIVTREFKVEDQPWILKVNGKAGKRFKGTKKGGVTE
NASYYIFTQCPDGAFEAFPVNGWYNFVPQAKHRTLTAEEAEEEWGRRNKVVNHFSIMLQR
RLREQERGPDDDDEEGEKGGKKKKKKGGRGGDLRIHDLEDDLELSSDESDSSGGEDGDSK
PKKKGGDVKGKGKKKKKKRGSDSEANEDSDDGDFEGLEVDYMSDESSSEEEAGEEKAKSN
KEAVPKGIDEASESEEESEEEKQNEEEGKEEEEEEEGKKTPVQTKKKRDSSGESDTSEDS
DIDGEAASALFMVKKRTPPKRGGGRGSGGSSRTGSRPGTPSIDSASTSNTLRAAASKLEQ
GKRHVVGGSSESPAAKRLKMESSSMAVTTQSPAPSGKSTPQPPSGKSTPSSSDVQLTEEA
VRRYLIRKPMTTKDLLKKFQTKRTGLSSEQTVNVLAQILKRLNPERKNVNDKMHFYLTE
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcactgggtggcagcagttcctcttctacagagtacatagtccgggtccccaag
aacaccagtaagaagtacagcatcatggcctttaactctggggacaaagtcaactgctcc
tcctggacccaggctcgtatggagcgggacatgagtaacaggaggatgtatggtgtggag
gagactgaggagggggcggcaggcagtgagtttgggaagaagcagagggaggaggcacgc
aggaagaagtttggaatcgtcaccagggagttcaaggtggaggaccaaccctggatcctc
aaggtcaacggcaaggcagggaagaggttcaagggtacgaagaaagggggcgtaacggag
aatgcgtcctactacatctttacccagtgtcccgacggggcctttgaggccttccccgtc
aacggttggtacaacttcgtgccccaggccaaacaccgcacgctaaccgccgaagaggca
gaggaggagtggggcaggaggaacaaggtggtgaaccacttcagcatcatgctccagagg
cgcctgcgggagcaggagagaggcccggacgatgacgacgaggagggcgagaaggggggg
aagaagaaaaagaagaaaggaggaagaggaggggacctgcgcatccatgacctggaggat
gacctggagctgagcagtgatgagagtgacagcagtggaggagaagatggagacagcaag
cccaagaagaaagggggggatgtgaaggggaaggggaagaagaaaaagaagaagaggggg
agtgacagcgaggctaatgaggacagtgacgatggagactttgagggcctggaggtggac
tacatgtcagatgagagcagttcagaggaagaggccggcgaagagaaggccaagtccaat
aaagaggccgttcccaaaggaatcgacgaggcatctgagagtgaggaagagagcgaggag
gagaaacagaacgaggaagaggggaaagaggaggaggaggaagaagaagggaagaagacc
ccagtccagacgaagaagaagagagacagcagcggtgagtcggacacttcggaggacagc
gacatcgatggagaggctgcctccgctctcttcatggtgaagaagcgtactcctcctaag
cgcggtggtgggcgtggctctggaggcagctccaggactggcagtcgccctggaacaccg
tccatagactccgcctccacctccaacacactccgagccgccgctagcaaactggagcaa
ggtaagagacatgtggtgggtggtagctctgagtctccagctgccaagaggctgaagatg
gagtccagcagtatggctgtcaccacccagagtcctgccccctcagggaagagcacgcca
cagcccccctcaggcaaatcaacccccagttccagtgacgttcagctgacggaggaggcg
gtgcgccgctacctgatccggaagcccatgaccaccaaggacctgctgaagaagttccag
accaagaggactggcctgagcagcgagcagacggtcaatgtcctggcccagatcctcaaa
cgcctcaaccccgagaggaagaacgtcaacgacaagatgcacttctacctcaccgagtaa
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