Salvelinus namaycush (lake trout): 120034704
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Entry
120034704 CDS
T07522
Name
(RefSeq) integrin alpha-3-like isoform X1
KO
K06482
integrin alpha 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04810
Regulation of actin cytoskeleton
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120034704
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120034704
09142 Cell motility
04820 Cytoskeleton in muscle cells
120034704
04810 Regulation of actin cytoskeleton
120034704
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120034704
04515 Cell adhesion molecules [BR:
snh04515
]
120034704
04090 CD molecules [BR:
snh04090
]
120034704
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
120034704
Cell adhesion molecules [BR:
snh04515
]
Integrins
Integrin alpha subunits
120034704
CD molecules [BR:
snh04090
]
Proteins
120034704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
Collectrin
DUF4381
Motif
Other DBs
NCBI-GeneID:
120034704
NCBI-ProteinID:
XP_038837243
UniProt:
A0A8U0U2F1
LinkDB
All DBs
Position
Sna3:64044323..64086501
Genome browser
AA seq
1066 aa
AA seq
DB search
MAIFQLHRFSTNTYYLLLLVLLCTVHILQGFNLDVRFPVIKEGKTPGSLFGFSVALHKQM
VGEKRYLLLVGAPKEKAESGVKASETGDVYTCPVNVAPSDCTRMNLIGSDPDLIEGEDRV
EDMWLGVTVASQRQPGGRILTCGHRFVKLHGVLKLRQMIGKCYIRGNDLNYNETDMHWQN
PDQVCSHTKDITGEVMCNMGISAAITDTEVIVGAPGSFEWQGNVHVSWMNPNVIYDTKRS
SFPNFGNRRHIYIGYSVAEGRGLLSQSQDTVVTGAPKDNKDDAKGSVILTVKKKSTSGDG
DQLKPYLTLRGEQMGSYFGNSLAVADLNNDGWMDLIVGAPFYFDRKKELGGAVYVYMNEN
GSFRQNSSIILRGPRDSAFGMAVAAIGDVNQDGFQDFAVGAPFHGTGRVFIWTGSAEGIS
QEPSQVIEGEDIAGGGFKTFGYSINGGLDVDENRYPDMVVGSLDDRVALLRARPVIHLIK
TLEVTPEIVDPKDCDNCMEVEVCFNYTLSTGDKDFRKNVTVKYTVEADLTRHNHRVRFQD
NGLDSYTGFLSMPSAKCKTLRLGLVSPIRDKVEPVVFSLNVSLHEGHPKARQSLQNLDAF
PVLSEGKASHVKKEIHFQKACGPDNTCQSNLQMKAEFANEEQTPFPSHDGHQILQYSASV
KKVMLVVDVTNFQLPGKPAEDAHNAMLNVTIPPSLIYSAFRSKNNNPAIKCSAEDMVVLC
ELGNPFTSNQMDQVLIIFQTSEISLDTREIRSTLQLSTLSEQSNVQPLPLVMVVEYTLEA
SFALAQYTDHTHFSGEIMGESGMKTAGDVGSPVEFTFKVNVLGKPLGNLGNLEVEFDWPW
EVANGKWLLYLTEIQTKGTSDSHCVPPGAIVNPLKLMLPESKARRRRKREEGSTEEVHPR
EPRASLNLKGTRKKSFKLDCVTGTAHCVKFICPLRNMNNTATIIVRARVWNSTMLEDYRE
AWRVTVNGKATLKLVTDKPTIRMNTESTEFTLNIDPELGEESTYQVPLWIIIVSAVAGVL
LLAFIILLMWKCGFFRRASTREMYEAKAQKAEMKTQPSEVERLTEE
NT seq
3201 nt
NT seq
+upstream
nt +downstream
nt
atggcaatctttcaactacaccggttctctacgaatacctattacctcctgttgcttgtc
ctgttgtgcacagtgcatattcttcaggggttcaacctagatgtgcggtttcctgttatc
aaggaaggaaagaccccgggaagtctctttgggttctcggtggcacttcacaaacagatg
gtgggagagaaaagatacctactacttgttggcgcacccaaagagaaggcagagtctggc
gtgaaggccagtgaaacaggagatgtgtatacctgccctgtaaacgttgccccatcagat
tgcaccaggatgaacctgattggctcagaccccgacctcattgagggtgaggacagagtg
gaggatatgtggctgggggtaaccgtggccagccaaagacagccagggggccgaattctg
acctgtggccatcgctttgtgaagttacatggcgtattgaagctgcgtcagatgattggg
aagtgttatatccgtggtaacgacctgaactataatgaaacagacatgcactggcagaac
cctgatcaggtgtgcagccacactaaagacatcacaggcgaagtcatgtgcaacatgggc
atctctgctgccatcactgacacagaggtcatcgtgggcgcccctggcagctttgagtgg
caaggcaatgttcatgtctcctggatgaatccaaatgtcatctatgacaccaagagaagc
agcttccccaactttggtaatcgacggcacatttacataggctactcggtggcagagggc
cgaggcctcctcagccagagccaggacacagtggtgacaggggctcctaaggataacaag
gatgacgccaaaggctcggtcattctgactgtgaagaagaagtcgacgtcaggggacggg
gaccagctgaaaccctacctcaccctgagaggcgagcagatgggctcatactttgggaac
tccctagccgtggcagacctcaacaatgatggttggatggatctgatcgtcggagccccg
ttctattttgatcggaagaaggagcttggtggagcggtgtacgtctatatgaacgagaac
ggctccttccggcagaactccagcatcatactccgaggccctagagactctgcgtttgga
atggctgtggctgccattggagatgtcaaccaagatggctttcaagattttgcggtgggc
gctccgttccatggaacaggcagggtgttcatctggacaggcagtgctgagggcatctct
caggagcccagtcaggtgattgagggggaggatatagctggaggtgggttcaagacgttt
ggctactccatcaacggagggctggatgtggatgagaaccgctaccccgacatggtggtc
ggctcactggacgaccgcgtagccttactgagggcccgcccagtcattcacctcattaaa
actcttgaagtgacgccagagattgtggaccctaaagactgtgacaactgtatggaggtg
gaggtctgtttcaactacacactgagcactggggacaaggacttcaggaagaacgtcact
gtgaagtacactgtggaagccgacctaacgcggcacaaccaccgggtccgtttccaagac
aatggcctggacagctacactggtttcttgtcaatgccatctgccaaatgcaaaacgctg
aggctcggactagtgagtcccatccgagacaaggtggagcccgtagtcttctccctgaac
gtatccctccatgaggggcatcccaaagcccggcagtccctgcagaacctggatgccttc
cctgtgctcagtgagggaaaggccagccatgtcaaaaaggagattcacttccagaaagcc
tgtggcccggacaatacgtgccagagtaacctgcagatgaaggcagagtttgccaatgaa
gagcagacaccttttcccagccatgatggtcaccagatcctccagtacagcgccagtgtc
aagaaggtaatgttggtcgtggacgtgaccaacttccagttgccagggaaaccggcggag
gacgctcacaatgccatgctcaacgtcaccattcccccgtcactgatctactctgccttt
cgctcaaagaacaacaacccagccatcaagtgttcagcagaggatatggttgtactgtgt
gagctggggaacccattcaccagcaaccagatggatcaggtcctgatcatctttcagacg
tctgagatcagcctggacaccagagagattcgctctacgctgcagctttccacgttgagt
gaacagagcaatgtacaaccgctgcctcttgtcatggtggtggagtatacactggaggcg
tcttttgcacttgcccagtacacagatcacactcacttcagtggggagatcatgggagaa
tcgggcatgaagactgccggcgatgttggaagtcctgtggagttcacatttaaggtgaat
gttcttgggaagccgctgggtaaccttggaaacctggaggtggagtttgattggccctgg
gaggtagccaatggcaagtggctgctgtacctgacggagatccagaccaaagggacgtca
gactctcactgtgtgcctcctggagccatcgtcaacccactcaaactcatgttaccagag
agcaaagccaggaggagaaggaagcgagaggagggctccacagaggaggtgcaccccaga
gaaccccgggcctccctcaatctgaagggaactcgcaaaaagtcctttaaactggactgt
gtcacgggcactgctcactgtgtgaaattcatctgccctctccgcaacatgaacaacact
gcgacaatcattgtcagggccagagtgtggaacagcaccatgctggaggactacagggaa
gcgtggcgggtgacagtgaatggcaaggccacactgaaactggtcacagacaaacccacc
atcaggatgaacactgagagcacagagttcaccctgaatatagacccagagctgggggag
gagtctacgtaccaggttcccctgtggatcatcatcgtgtctgctgtcgctggcgtcctc
cttctggccttcatcatcctccttatgtggaagtgtggtttcttcaggagggccagcacc
agggagatgtacgaggccaaggcccagaaagctgagatgaagacccagccgtcggaggtg
gagaggctgactgaggagtag
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integrated database retrieval system
