Salvelinus namaycush (lake trout): 120034753
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Entry
120034753 CDS
T07522
Name
(RefSeq) LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC6
KO
K22372
E3 ISG15--protein ligase [EC:2.3.2.-]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120034753
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
UBL E3 ligases
120034753
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RCC1
HECT
RCC1_2
Motif
Other DBs
NCBI-GeneID:
120034753
NCBI-ProteinID:
XP_038837286
UniProt:
A0A8U0U380
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Position
Sna42:complement(15207692..15247341)
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AA seq
1700 aa
AA seq
DB search
MFSRGENIRDGFGLVKSNGLVKANTDSCLNVILTKSPIAHLSAGNKVVAFIRSNGKVSFA
CRMHEYKDGRRVTWKLKGVEYREKILALSCGDTHVVLLSEEGRVFCLTSASNDPRPVGNL
NQVIQVACGDQHSIALTQDGKVFTWGQNSRGQLGLGKGEPSTSSPQPVKSLSGIPLAQIT
AGGDHSFALTHSGAVXNSAGQLGLGDTIDRPAPAPVDCLNLKKTIAISCGVEHTVVLTKG
GLVFTFGSGRYGQLGHNSLRNELRPRLVAELWGAKVTQIACGRNHTLAFAGSFKKIYSFG
HGEQGQLGNGVKMDQSVPLPVQLPQDHIDDLQIEQTFAGGNHSFALCSSAKESGKGLNDS
RVEKMTQTLDNDIIDRWILQCDSTSWEKIQKEITETFSSASCLNGSFLDKSCDKHYQTSL
KHSGLDLSSARMAFQKLAEKDKVLAEVKNVVHRILLPSLSNDPIGVEGLRVYLIIPELLR
VLLKQQRGIDITEAFVATVLRLNPDKLQVKFQAENGVDEGGVSLEFFSLLGRELLTMEPK
TLEVYESGLAWFTTDKLLGLTTTLDDLKELSPTEARKKYVELYVDMKLNKSVQIQFADFE
KGFHKGCPIQTWRMFLPEELMTLLQGDDNYEWDKLRENAEYQGYRPADDIIQNFWSVFTE
FSEEQKKKFLSNARHHLNLHIIMFCWGDGSSGQFGLNFENVSVPIAGNIFSDKVTEIACG
EQHTLFLTVDGRILSCGRNSKGQLGRQRNINSKLPAPVEGLGAVVSVACGQDHSVAVCAS
GQVYSWGAGGEGQLGIALTTVSKVPRPRPVPIPSPLPITVIQVACGNSHSLALTKGGQVF
SWGLNSHGQLGLGKGVPLQPIPALVRSLTGVPVTQVAAGGTHTLALTLPGLVYCCGANRA
GQLGLNRVDEKGRFNICAVPALRVLGVSFISCGEAHSAVLTKGGQVFTFGEGSRGQLGHN
ASANELLPKLVEGMDGLVSQIACGSHHTLVLGSSGQLWAFGSGVKGQLGTGITEGCLRPT
SVLLKGASGGAETVILNDMKISVGWNSNFIYTAESSEREQPIGRLDEAKLQKWLTMKQGN
TEAQREISLMFSTSSSLVASFTKASESPSTKAAGALRVDLEAASQAFDQLFNIPWIRKSV
NILPLVDNIFSSAAVIKSPEIFMILPTIPLFHEDHNVMNMVMTLAIVIDEDLNETAMKIL
KEWWSSMETNIMTKHILMWKNALSFMLRNGLLATHNPGVKFLLEALKSLHRANKRAGRTQ
EVPASTFYVEEINDSVILLEDVKLWRFWSTREDTEVTPVIFCHYPFVLSLICKMAIFNSN
ALYTKVVHQFTHLLTVMYPSGTFRDNPESPPAPVFQLTLRRPSLIEDTFRQLGAADHDYF
QRELVVQFVEDMKLSLVNIRDFFLHVFEELLASESEMFMYNDTKTLVWFPAKPRVEEKSY
FLFGVLCGMALYNHNIVHLPFPLALFKKMVGVKPSLEDLREFDPVVGGRLRYLLEDYTDD
DVEENLDITFTVIWDDQKVELDPKETGKSVTSFNKKQFVDAYVNLAFNQSAEKVFEEFRR
GFFKVCDRDVVELFQPEELRGVMVGKEDYDWDTLKQNTVYDGEYHARHPNIVTFWEAFEE
LTDNEKKAFLLFLTGCDRVPILGMDKIQMTVAVLQNSTELHFPESHTCFSLLFLPIYSSK
EMLLARLKEAVAHNRGFWKE
NT seq
5103 nt
NT seq
+upstream
nt +downstream
nt
atgttttcgaggggagagaacatccgcgatggcttcggtttagtaaagtcgaatggtttg
gtaaaggcgaacacggatagttgcctaaatgtcatactcacgaaatctccaattgcgcat
ctgtccgcaggtaataaagtggtcgcgtttatcagaagtaatgggaaagtgtccttcgct
tgcaggatgcacgagtataaagatgggagaagggtcacatggaaactgaagggtgtggag
tacagggagaagattctggctctgagttgcggagatacccatgttgttttactgtctgag
gagggcagagtgttttgtcttacctctgcctccaatgatcccagaccagtgggtaacttg
aatcaggtcattcaagttgcatgtggagaccagcattccattgcactaacccaagatggt
aaagtgttcacgtggggccagaactccagaggacagctgggtttggggaagggagagccc
agcacctcgtctccccagcctgtcaagtctctgtcagggatccccctggctcagatcacc
gctgggggagaccacagcttcgccctgacccactctggagccgtcnngaacagcgccggg
cagctgggactgggggacacaatagacagacctgctccagctcctgttgattgcctgaat
ctaaagaagaccattgctatttcctgtggagtggagcatactgttgttctgacaaaggga
ggtttagtgttcacatttggctcgggtcgatatggacagcttggacacaactctctcaga
aatgaactacgacctcgactggtggccgaactctggggggcaaaggtgacccagatagcc
tgtggaagaaaccacacattggcgttcgcgggctccttcaaaaagatctactcatttggg
catggagagcaagggcagctgggaaatggagtcaagatggatcagtctgtgcctctgcca
gtacagctaccacaggaccacattgatgacctgcaaattgaacaaacctttgctggagga
aaccattcttttgccttgtgcagctccgctaaggaatcaggaaaagggttgaatgactcc
cgtgttgaaaaaatgactcaaacattagacaatgacatcattgacagatggatcttgcaa
tgtgactcaacatcatgggagaaaatacagaaggaaatcacagaaacattctcttctgca
tcatgtttaaatgggagcttcctggacaaaagttgtgacaaacattaccaaacctcactg
aagcactctggcctggacttgtcatccgcccgaatggcttttcaaaagcttgcagaaaag
gacaaagttctggctgaggttaaaaatgtcgtccatcgcatactccttccctccctgagt
aacgatcccattggtgtggagggtctgagggtgtacctcatcatccctgagctcttgagg
gttctcctaaaacaacaacgtggcatagacattactgaggcctttgtggctactgttctc
agactgaacccagacaagctccaggtgaagtttcaagcagagaatggtgtggatgaaggt
ggtgtttcactggaattcttcagcctcctggggagggaacttctgacaatggaaccaaag
acactggaggtttacgagtctggactagcgtggttcacaacagataagcttctgggtctg
actacaacattggatgaccttaaagagctgtctccaactgaagcaaggaagaaatatgtt
gagttgtacgttgacatgaagctcaacaagtcggtgcagattcagtttgcagactttgag
aaaggcttccacaaaggctgccctatacagacatggaggatgtttctacctgaggagctg
atgacacttctacaaggagatgacaactacgagtgggacaagttgagagagaatgccgag
tatcaaggatataggcccgcagatgacatcatccagaacttctggagtgttttcacagag
ttctcagaggagcaaaagaagaagttcctaagtaacgccaggcatcaccttaaccttcac
atcatcatgttctgctggggagacggttcgagtggacagtttggtctaaactttgagaat
gtgtctgttccgatagcagggaatatattctctgataaagtcacagaaattgcttgtggg
gagcaacacactttatttctcacggtagatggcaggatcctatcatgcgggcgcaactca
aagggacaacttggcagacagaggaacataaattcaaaactaccagccccagtggagggt
ctgggggcagtggtctctgtggcttgtggtcaggaccactctgtagctgtgtgcgcatca
ggacaggtctactcctggggggcaggaggtgagggacagctgggcatcgcccttactact
gtctccaaagtccccaggccaagaccagttccaataccttcgcccttgccgataacagtg
atacaggttgcttgtggaaattcccattcgttggccctgactaaaggaggacaggtgttc
tcatggggtctgaacagtcatggacagctgggcctggggaagggagtccctctgcagccc
attcctgccctggtgcgctccctcactggagtcccagtgacccaggtagcagccggagga
acccacactctggccctcaccctcccaggcctggtctactgctgtggggcgaacagggct
gggcagctgggactcaaccgtgtggatgagaaaggccggttcaacatctgtgctgtgcct
gctctcagagtcttgggggtttccttcatcagctgtggagaggcgcattctgctgttctc
accaagggtggacaggtgttcacctttggggagggaagccgaggccagcttgggcacaac
gcatcagctaacgaactcctacccaaactggtagagggtatggatggactggtctcacag
atagcatgtggcagccatcacaccctggtgctggggtcctcaggtcaactctgggccttt
ggcagtggggtcaaaggtcagctagggactggcattacggagggctgcttgcgacccacc
tcagtgctgctgaaaggggcttctggtggggcagagacagtcatactcaacgacatgaag
atatcagtgggatggaattcaaacttcatttacaccgctgagagttctgaaagagaacag
ccaatcgggaggttagatgaagccaagctgcaaaaatggctgacgatgaagcaaggaaat
acagaggctcaaagagaaatatccttgatgttctcaacaagttcaagtcttgtggccagt
ttcaccaaagccagtgagtctccatcaactaaagctgcaggagctttgagagtggaccta
gaggctgctagccaggcttttgatcagctcttcaacatcccatggatcaggaaatcagta
aatatattgccactggtggacaatattttcagttcagcagctgtcatcaagtcaccagag
atctttatgatactacccacaatccctcttttccacgaggaccacaacgtcatgaacatg
gtcatgactttagcaatagttatcgatgaggatctgaatgaaacggccatgaaaatttta
aaagagtggtggtcctcaatggagacaaacatcatgacaaagcacattctgatgtggaag
aatgccctgtcattcatgctgaggaacggtcttctggctacccacaaccccggagtcaaa
ttcctgctggaagccctcaagtccctccacagagcaaacaaaagggccggaagaacccag
gaagttccagccagtaccttttatgtggaagagatcaacgatagtgttattctattggag
gatgtgaagctttggcgtttttggtcaacaagggaggacacagaggtgacaccagtcatc
ttttgccattacccatttgtgttgagtctgatctgcaagatggcgattttcaacagtaat
gcactttatacaaaggtggttcaccaattcacccacttgctgacagtgatgtatccttct
ggaacgttccgagacaacccagaatctccccctgctccagtcttccagttgaccttaagg
cgcccgtcactcatcgaagacaccttcagacaactgggtgctgcagatcatgactacttc
cagagagaacttgtggtgcagtttgtggaggacatgaagctgtcgctcgtcaacataagg
gacttcttcctccatgtgtttgaagagctgttggcatcagagtctgagatgttcatgtac
aacgacaccaagacactggtctggttccctgccaagcccagagtggaggagaagagctac
ttcctgtttggtgtcttgtgtggcatggccctgtacaaccacaacattgtacacctgccc
ttccccctggccctgttcaagaagatggtgggggtcaagccctcactggaggacctgaga
gagtttgaccctgttgtgggagggagattgcggtacctcttggaggactacactgatgat
gatgttgaagaaaacctggacataaccttcaccgtgatctgggatgaccagaaggtggag
cttgatcccaaagaaacaggaaaatcagtcacaagttttaacaagaagcagtttgttgat
gcctacgtgaaccttgccttcaaccaatcagcggagaaggtgtttgaagagttcaggaga
ggcttcttcaaggtgtgtgacagggacgtggtggagttgttccagcctgaggagctcagg
ggagtcatggtggggaaagaggactacgactgggacacgctcaaacagaacactgtgtat
gatggagagtaccatgccagacatcccaacatcgtcacattctgggaggcttttgaggaa
ctgacagacaacgaaaagaaagcttttctcctgttcctgacaggctgtgatcgcgttcct
atcctgggcatggacaagatccagatgactgtagcagtcttgcagaactctactgaacta
catttcccagaatcccatacctgcttctccctactatttctgcccatctactcctccaag
gagatgctgctggccaggctcaaagaggcggtggcccacaacagaggcttctggaaggag
taa
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