Salvelinus namaycush (lake trout): 120034926
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Entry
120034926 CDS
T07522
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120034926
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120034926
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120034926
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120034926
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
120034926
NCBI-ProteinID:
XP_038837549
UniProt:
A0A8U0Q4A2
LinkDB
All DBs
Position
Sna42:complement(6913398..6954055)
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AA seq
2283 aa
AA seq
DB search
MAISTQLGLLLWKNFTYRRRQTLQLIIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRHPTPGETPGLVGNFNDSIISRLFIDAKKILLYSQNDK
SFEGYKVLVRALGKLQSNTAGFKLKDFLRDKETLSSFLHRNASLSHHAVQQIVEADLNLE
KVLIGGFGVHLRDMCNTTSLEEFVTISDKNVSRLTQDIICKASPDWLNKAQDHFLSNLDF
LKPIRKDVKSDPEVVQKVSAATDGLLESLGALAVELASMKSWKEMRNEILYLTANATGSP
SHMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGGNGSDDEPVSAYDNTSTPY
CNSMMRSLEASPISRMIWRALKPLLMGKILYTPDTPATQRIIHEMNKTFQELGILRDLGG
MWEEMRPKVWTFMESSEEMNLVRTLLQNNASARFFNDRLAGTEWKVEDVSRFLTKAAEDK
RPAGSAYTWREVFNETDDAIKTISRFMECVNLDKLEPVANEERLVNKSMGLLDNQKFWAG
IVFPDIARSNSSDLPGNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDVIEQGIIRAVTGSKEKTGVYIQQMPYPCYVDDMFLRVMSRSMPLFMTLAWMYSVAL
IIKGVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISASLLVVILKMGNLLPYSD
PCVVFLFLASFAVVTIMQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKVIVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLSSPLEEDSYSLTTSICLMLFDSFL
YGVMTWYIEAVFPGQYGIPRPWYFPFTKSYWCGEKQGKNIQERKEGNSEAVCIEEEPSHI
EPGVYIKNLVKVYSHGNKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGKDIRSELSAIRQNLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEKVKAEMEQI
INDIGLPHKRQCRSNTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
KYRAGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDFD
LTLSSCRNSSSSSSVSYSKKVGLPQPQPQALTVLKEDSVSESSSDAGLGSEPESEATTID
VTMISNVIFKHVPAARLVEDLGHELTYVLPYKAAKGGAFVELFHEIDDRLSDLGISSYGI
SDTTLEEIFLKVAEDSGVDVAELPKSDGTIPARRHRRHAFGDHQSCLKPFNEDDAFDFND
SEGDPESRETDWLGGSDGKGSYQVKGWRLIRQQFVALIWKRFLYARRSRKGFFAQIVLPA
VFVCIALVFSLIVPPFGKYPSLELEPGMYEEQFTFISNDAPEDADTNKLLGALTSYDGFG
SRCDSLHAPCNTLDDEWVVPEVLESVRDIFMNGNWSMENPSPLCECSCEGRKKMLPECPA
GAGGLPPPQVKISDQGTLQNLTGRNISDYLVKTYAQIIGKSLKNKISVNEFRYGGFSLGA
RNTQLLPPGDDIDQAISEIRRRFHLERGTAADRFLASLSSFIQGLDTKNNVKIWFNNKGW
HSIGSFLNVMNNGILRASLPAGQDPSKYGIHAFNHPLNLTKEQLSQVALMTTSVDVLVSI
CVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPFLYWVSNFIWDMCNYIVPATLVII
IFICFQQDAYVSSTNLPVLALLLLFYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGI
NGSVSTFVLELFGSNEIGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMSDALERFGENR
FRSPLAWDMVGKNLFAMAVQGVVFFTITVLIQYRFCIKARSMSTDQKPIGEEDEDVARER
QRILGGGGQSDILELKQLTKVYNRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKML
TGDSIVTSGEAYLAGKSVLTEINEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEK
EVCEVAEWGIRKLGLIKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVFLDEPTTGMDPKA
RRALWNCILSIVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGY
TIILRVAGPDPDLRPVMEFIEKELPGSTLKEKHRNMLQYQLSSSKTSLARIFSILAKNKE
WLHIEDYSVSQTTLDQVFVNFAKDQSDEDHLKDISMHKRDAVAVDITQLKSFLTDEKARE
SCV
NT seq
6852 nt
NT seq
+upstream
nt +downstream
nt
atggccatctctactcaactgggcttactgctgtggaagaacttcacctacagaaggaga
cagacactccagctaattatcgagataatatggccgctcttcatcttcttcatcctcata
tctgtgaggatgcattatccgccctacgagcaacatgagtgccatttccctaacaaggcc
atgccctcggcgggcaccttgccctgggtacaagggatcatctgtaacgccaacaacccc
tgcttccgccaccccacaccaggagagaccccagggctggtgggcaacttcaacgattct
ataatctcccgtctgttcatcgatgccaagaagatcctcctctacagccagaatgacaag
agcttcgagggctacaaagttctggtgcgggctctgggcaaactacagagcaacacggca
ggtttcaagctgaaggactttctccgtgataaggagaccttatcgtcgttcctgcatcgc
aacgcctccctatcccatcatgccgtccagcagattgtagaggctgacctcaacctagag
aaggtcctgattggaggtttcggcgtccatcttagagatatgtgtaacaccacttccctg
gaggagtttgtgaccatctccgacaagaatgtgtcacggctcactcaagacatcatctgc
aaggcctcccctgattggctgaacaaggcccaggaccacttcctgtccaacctggacttc
ctgaaacccatacggaaggacgtgaagtccgaccctgaggtcgtccagaaggtatccgcg
gcaaccgacggtctgctagagagcttgggagcgctggctgtagagctggccagtatgaag
agttggaaggagatgcgtaacgagatcctttacctgacagccaacgccacaggctccccc
agccacatgtaccaggccgtgtcccgtatcgtctgtggccaccccgagggcggcggactg
aagatcaagtcgctcaactggtacgaggacaacaactacaaggccctgttcggtaaccat
ggcggcaacggcagcgacgacgaacccgtgtccgcctacgacaacacctcaactccgtac
tgtaacagcatgatgaggagtctggaagctagccccatctccaggatgatctggagggcc
ctgaagcctctcctcatgggaaagatcctgtacacccccgacactcccgccacacagagg
atcatacacgagatgaacaagacgttccaggagctgggtatcctgagggacctgggtggg
atgtgggaggagatgaggcctaaagtctggaccttcatggagagcagtgaggagatgaac
ctggttcggacactgcttcagaacaacgccagcgcccgcttctttaacgaccgtctggct
ggcacagagtggaaggtggaggacgtgtcccgcttcctgaccaaggccgcggaggacaaa
cgtcccgccggctcggcctacacctggagagaggtgttcaacgagaccgacgacgctatc
aagaccatctcccgctttatggagtgtgtgaacctggataaactagagccagtggccaat
gaggaaagactggtcaacaaatccatgggtctcctagacaaccagaagttctgggctggg
atagtgtttccggacatcgcccgtagcaacagttctgacctgccgggtaacgtcaactac
aagatccgcatggacatcgacaacgtggagcgcaccaacaagatcaaggacggttactgg
gaccctggtccccgggcggatccctttgaggacctgcgctacatctggggtggtttctcc
tacctgcaggacgttattgaacagggcatcatcagggcagtgacgggcagtaaagagaag
actggagtttacatccaacagatgccttacccctgctacgtagacgatatgttcctgcgg
gtgatgagtcgctccatgcctctcttcatgaccctggcttggatgtactctgtggccctc
atcatcaagggcgtggtctatgagaaggaggcacggctcaaagagaccatgaggatcatg
ggattggacaacggcattctgtggctcagctggttcatcagcagcctcatccccctgctc
atctccgcctcgctgctggtggtcatactcaagatggggaacctgcttccctacagcgac
ccttgcgtggtcttcctgttcctggcttcctttgctgtggtaaccatcatgcagtgcttc
ctcatcagtaccatcttctcccgtgccaacctggcggcggcctgcgggggaatcatctac
ttcaccctctatctgccctacgtcctctgtgtggcctggcaggactacgtgggtttcggg
gctaaagtcattgtgagcctgttgtccccggtggcgtttgggttcggctgtgagtacttt
gccctgtttgaggagcagggagtgggtatccagtggtccaacctgttgtccagccccttg
gaagaggacagctactccctcaccacctccatctgtctcatgctgtttgactccttcctc
tacggggtcatgacctggtacatcgaggctgtcttccctggccagtatgggatccccaga
ccctggtactttcccttcaccaagtcctactggtgtggagagaaacaagggaagaatata
caagaaagaaaggaaggaaattcagaagctgtgtgcatcgaagaggagccgtctcacatc
gagcctggtgtttacatcaagaacctagtgaaggtgtatagccatggcaacaagctggct
gtagacgggttgaccctgggtttctacgaggggcagatcacctctttcctggggcacaac
ggagccggcaagaccaccaccatgtccatcctgacgggtctgttcccgcccacctctggc
accgcctacatcctgggcaaggacatccgctcggagctcagcgccatccgacagaacctg
ggtgtctgcccgcaacacaacgttctcttcagcatgctgacggtggaggagcacatctgg
ttctatgcccgtctgaagggtctgtctgaggagaaggtgaaggctgagatggagcagatc
atcaacgacatcggcctgcctcacaaacgccagtgtcgtagcaacacgctgtccgggggc
atgcagaggaaactgtcagtggcgctggctttcgttggagggtcaaaggtcgtgatcctg
gatgaacccactgctggagtcgacccctacgcacgccggggaatttgggacctgcttctg
aagtatcgtgccggccgcaccatcatcctctcaactcaccacatggacgaggcggacatc
ttgggcgaccgcatcgccatcatctcccacggcaagctgtgctgcgtgggctcctccctg
ttcctgaagacccagctggggacgggctactacctgaccctggtgaagagagacttcgac
ctgaccctcagctcctgtaggaactcctccagcagcagctctgtctcctacagcaagaag
gtgggcctccctcagccgcaacctcaggccctcacagtcctaaaggaggacagtgtttct
gagagcagctctgacgctggactgggtagtgaacctgagagtgaagccaccactattgac
gtaaccatgatctccaatgtgatcttcaagcacgtccccgctgccaggctggttgaggac
ctgggccatgaactcacctacgttctgccctacaaggcggccaaaggcggagccttcgtg
gaactcttccacgagatcgacgaccgcctgtctgacctcggcatttccagctacggcatc
tcagacaccaccctggaagagattttcctgaaagtagcagaggacagtggagtggacgtt
gctgaacttcccaaatctgatggcaccatcccggctcgtaggcaccgcagacatgcgttc
ggagaccaccagagctgtctgaaacccttcaacgaggacgacgctttcgacttcaacgac
tcagaaggtgacccagaatctcgtgagacggactggctgggaggctcggatggtaaaggc
tcgtaccaggtcaaaggctggcgtctgattagacagcagtttgtggctttgatatggaaa
cgcttcctgtatgcccggcgctccaggaaaggcttcttcgctcagatcgtgcttcctgct
gtgtttgtgtgcatcgccctcgtcttcagtctcatcgtccctccgtttggaaagtatccc
agcctggagctggagcctggcatgtatgaagaacagttcaccttcatcagcaacgacgcc
cctgaggatgcagacactaacaagctgttgggtgccctgacaagctacgatggctttggt
tcacgctgtgactcacttcatgctccttgcaacacgttggatgatgagtgggttgttcct
gaggtactggagagtgtgagggacatcttcatgaatggcaactggagtatggaaaacccc
tctcctctgtgtgagtgcagctgtgaaggacgcaagaagatgctacctgaatgcccagcg
ggagctggtggtcttcctcctccacaggtgaaaatcagtgaccaaggtaccctgcaaaat
ctgactggcagaaatatctcagattacctggtcaaaacctatgctcagattatcgggaaa
agtttgaagaacaaaatctcggtcaatgaattcagatatggtggattctcattgggcgct
aggaacacacagctcctcccaccaggtgatgatattgatcaggccatctctgagatcaga
cgacgcttccacctggaaagagggactgctgctgaccgtttcctcgccagcttatccagt
tttatccagggactggacactaagaacaacgtcaagatctggttcaacaacaaggggtgg
cacagcatcgggtctttcctgaacgtgatgaacaacggaatcctccgtgccagcctgccc
gccggccaggaccccagcaagtatggcatccatgccttcaaccacccactcaacctcacc
aaggagcaactgtcccaggtcgcactgatgaccacctctgtggacgtgctggtgtccatc
tgcgtgatcttcgccatgtctttcgtcccggccagcttcgtagtcttcctcatccaggag
agagtcaacaaggccaaacacatgcagttcatcagtggggtgcagcccttcctctattgg
gtgtccaacttcatctgggacatgtgtaactacatcgtccctgctactctggtcattatc
atcttcatctgtttccaacaagacgcctacgtctcctccaccaacctgcctgtactggcc
ctgctgctgctgttctatgggtggtccatcacgcccctgatgtaccccgcgtccttcttc
tttaagatccccagcacggcctacgtggtgctcacctccgtcaacatcctcatcggcatc
aacggcagcgtctccacctttgtcctcgagctcttcggcagcaacgagatcggagggatc
aacgacatcctgaagaacgtgttcctgatcttccctcacttctgtctgggccgaggcctc
atcgacatggtgaagaaccaggccatgtccgacgctctggagaggtttggtgagaaccgg
ttccgttcccctctggcgtgggacatggtgggcaagaacctgttcgccatggctgtgcag
ggtgtggtcttcttcactatcaccgtgctcatccaataccgcttctgtatcaaggccaga
tctatgagcaccgaccagaaacctattggtgaagaggatgaagacgtggccagagagagg
caaaggattctcggaggagggggacagtctgacattctggaactcaagcagctgaccaag
gtgtacaatagaaaacagaaaccagcagtggatcgtctttgtgtgggaattcctccagga
gagtgttttggtcttcttggagtcaatggagcaggaaagacgagcaccttcaagatgctg
actggagactccatagtcacgagtggtgaagcttacctggcaggaaagagtgtgttgacg
gagataaacgaggtgcaccagaacatgggctactgccctcagtttgatgccatcaacgac
ctgctgactggcagggagcaccttgagttctacgccatcctgaggggggttcccgagaag
gaagtgtgtgaggtggcagagtggggcatccgtaaactaggcctgatcaagtatgtggac
aaggcagcagggagctacagtggagggaacatgaggaaactctccacggccatggcactg
atcggtggtccaccagtggtcttcctggacgagcccaccactggtatggaccccaaggcc
agacgggctctgtggaactgcattctcagtatcgtcaaggagggacgatcggtggttctc
acctcgcacagtatggaggagtgtgaggccctgtgtacgcggatggccatcatggtcaat
gggaggttccgctgcctgggcagcgtacagcacctaaagaacagatttggggatggctac
accatcatcctccgggtggcaggacctgacccggacctgaggccggtgatggagttcatt
gagaaggagcttccaggcagcactctgaaggagaagcacaggaacatgctgcagtatcag
ctgtcctcctccaaaacctccctggcacgcatcttcagcatcctggccaagaacaaggag
tggctgcacattgaggactactccgtttcccagacaacactagaccaagtatttgtcaat
ttcgccaaggaccaaagtgacgaggaccacttaaaagacatttcgatgcacaagagagac
gcggtggcagtggacattactcagctcaagtctttcctcacagacgagaaggccagggag
agctgtgtgtga
DBGET
integrated database retrieval system
