Salvelinus namaycush (lake trout): 120035038
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Entry
120035038 CDS
T07522
Name
(RefSeq) polycystin-2-like isoform X1
KO
K04986
polycystin 2
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
snh03037
]
120035038
04040 Ion channels [BR:
snh04040
]
120035038
Cilium and associated proteins [BR:
snh03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120035038
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
120035038
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PKD_channel
Polycystin_dom
Ion_trans
Fer4_24
Motif
Other DBs
NCBI-GeneID:
120035038
NCBI-ProteinID:
XP_038837729
UniProt:
A0A8U0U290
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Position
Sna42:complement(15297518..15313553)
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AA seq
915 aa
AA seq
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MSSTRVRSQQPQQNQAGRSATGAAVMSLPHRLDTSEGIEMENIQHQDLGLGGAIGTPSPP
SRQAWSRDNPGFEPEDEMMGADWPPASPGRRSVSTGSSSSCSSGLGSYTAGGSSTRIHRG
LYPTPTVDALQQDRHDIKSCGKRILEKIRVLWGTQLMEDSDSSRERYLRNVLREMVTYVI
FLITLCILTYGMVGSNMYYYTKVMSQLFLDTPLSPGDTATFRSLSTMGEFWKFTEGPFLN
GMYWEVWYNNKSLPENHSMIYYENLLLGVPRLRQVKVRNESCSVHEDLRDEVQDCYNMYT
PSNEDSAPFGPMNGTAWMYTEENSLNGSSYWGQVATYGGGGYYQDLARSRDESAGLLRSL
KHQLWLDRGTRAVFLDFSVYNGNINLFCIARLVVEFPATGGVVTSWQFQTVRLIRYVSSW
DYFVGVCEVAFCLFILYYVVEEALEIRIHRLRYFKSVWNCLDVLIVVLSVSAIIINITRT
SVVSNRLKDLLENHSAHPSFEPLAHLQVTFNNMAAVIVLFSWVKLFKFINFNKTMSQLST
TMSRCAKDLIGFAIMFFIIFLAYAQLAYLVFGTQVNDFSTFQACIFTQFRIILGDFEFSE
IEEANPVLGPIYFITFVFFIFFILMNMFLAIINDTYSEVKADMSQQRSEMEMTDLIKKGC
NKALMKLRLKKTTVDDISDSLRQAGGKLNFGELRQDLKGKGHTDVEIEAIFAKYDHGGDQ
ELTEHEHQQMRDDLEKEREDLDLERSSLPRPTSGRSFPRSHDDSEEDDDEDSGHSSRRRG
SSSGGVPYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEAMERAKLKRRDVLGKLLEGV
LEDERQGRDMDVQREQMERLVREELERWESDDTVSQVSHHQPTTAIGPGAQPRPRPSSSL
STDGVDAGGNGSGHV
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atgagctcgactcgggtgagatcacaacaaccgcagcagaatcaggctggcaggtccgcc
acgggcgcagcggttatgtccttgccgcacagattggacacaagcgaggggattgagatg
gagaacatacagcaccaggacttgggtctcgggggagccataggcacaccatcacccccc
tcaagacaagcctggagtcgggacaacccggggttcgaaccggaggatgagatgatgggg
gccgattggcctccggctagcccggggagaagatcagtgtccacgggctccagcagtagc
tgcagcagcgggttgggaagttataccgccggagggagcagcacccgcatccaccgtgga
ttatacccgaccccgacagtggatgccctgcagcaagacagacatgacatcaaaagctgt
gggaagaggatactggagaaaataagagttctatggggtactcagctgatggaggacagt
gacagcagcagagagaggtacctgaggaacgtcctgagagaaatggtcacctacgtcatc
ttcctcatcacactgtgtatcttgacctatgggatggtgggctccaacatgtactactac
accaaggtgatgtcccagctcttcctggatacaccactgtccccgggggacacagccaca
ttcagaagcctctcaactatgggtgaattctggaagttcacagagggtcccttcctgaac
gggatgtattgggaagtgtggtacaacaacaagagtctccctgagaaccacagtatgatc
tactatgagaacctgctactgggggtgccccgcctccgccaggtcaaagttcgcaacgaa
tcctgctccgtgcacgaggaccttagggacgaggtgcaggactgctacaacatgtacacc
cctagcaacgaggacagcgccccctttggccccatgaacggaactgcgtggatgtacaca
gaggagaacagcctgaatgggagtagttactggggccaggtggctacctacggtggaggg
gggtactaccaggacctggcccgttccagagatgagtcagccggcttgctacgctcccta
aaacaccagctgtggctggacagaggaaccagagccgtcttcctggacttctccgtctac
aacggcaacatcaacctcttctgtattgccaggttggtggtggagttccctgctacagga
ggcgtagtcacttcctggcagtttcagacggtgcgtctgattcgctacgtgtccagctgg
gactactttgtcggggtgtgtgaggtggccttctgcctcttcatcctgtactacgtggtg
gaggaggccctggagatacgcattcaccgcctgcgctacttcaagagcgtgtggaactgc
ctggacgtcctcatcgttgtgttgagtgtttctgccataatcatcaacatcaccagaacg
tccgtggtgagcaatcgtctcaaagaccttctggagaaccacagcgcccaccccagcttc
gagcctctggcacacctccaggttacgttcaacaacatggccgcagtcatcgtcctcttc
tcctgggtgaagctcttcaagttcatcaacttcaacaagaccatgagccagctgtccacc
accatgtctcgctgtgccaaggacctcatcggcttcgccatcatgttcttcatcatcttc
ctggcctacgctcagctggcctacctggtgtttggcacccaggtcaacgacttcagtacc
ttccaagcctgcatttttacccagttccgcatcatcctgggagactttgagttctcagag
atagaggaggctaacccagtcctgggacccatctacttcatcaccttcgtcttcttcatc
ttcttcatcctcatgaatatgttcctggccatcatcaatgacacctactcggaggtgaag
gcagacatgtcccagcagaggtctgagatggagatgacggacctcattaaaaagggctgt
aacaaagccttgatgaagctgagactgaagaagaccactgtggatgacatctcagacagt
ctgcgccaggccggtgggaaactcaacttcggcgagctccgccaggacctcaaaggaaag
ggccacacggatgtggagattgaggccatctttgccaagtatgaccacggtggggaccag
gagctgactgagcacgaacaccagcagatgagggacgacctggagaaagagagagaggac
ttggatctggagcgcagctcgttgcccagacccaccagtgggcggagcttcccccgtagc
catgacgactcggaggaggatgatgacgaggacagcgggcacagctcccgtcgccgcggc
agcagctcaggaggcgtgccctacgaagagtttcaagtgctggtgcgtcgtgttgaccga
atggagcactccataggtagtatagtgtctaagatcgatgcagtgattgtgaagctggag
gccatggagagagctaagctcaagaggagagacgtgctgggaaaactgctggagggggtg
ctggaggatgagaggcagggtcgggacatggacgtccagagagagcagatggagcggctg
gtgagggaggagctagagcgctgggagtctgacgacactgtctcacaggtcagccaccac
cagcccaccactgccattggtccaggagcccaaccacgcccccgcccctcctcctccctg
tctactgacggggtggacgctgggggtaatgggagtggccacgtgtaa
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