Salvelinus namaycush (lake trout): 120038749
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Entry
120038749 CDS
T07522
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
120038749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120038749
03036 Chromosome and associated proteins [BR:
snh03036
]
120038749
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
120038749
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
120038749
Chromatin remodeling factors
BAF complex
120038749
PBAF complex
120038749
GBAF(ncBAF) complex
120038749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
DEAD
HDA2-3
Motif
Other DBs
NCBI-GeneID:
120038749
NCBI-ProteinID:
XP_038840338
UniProt:
A0A8U0QC83
LinkDB
All DBs
Position
Sna3:75691529..75720061
Genome browser
AA seq
1638 aa
AA seq
DB search
MSTPDPPMGGTPRLGPSPRPGPSPGAMGPSPSPGSAHSMMGPSPGPPASGHSHPQQGPSG
YPQENMHQMHKPMEGMQEKGISDDPRYGPMKSMGMRPGGGHIGMGPPPSPMDQHFQGYPS
LLGGSEHSPSPVPANGPPPGPMMPSGPGVPMEGGDPQSMGQQNRVGVPGPSGGSGPGGVG
PGGPTPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPGMQQQPGMPNMPPS
SGPGAGPGQPPANYNRQLGMVGPNMPPPGPSGVPPGMQGQPTNGPPKQWPEGPMVNAAAP
SSAPQKLIPPQPTGRPSPAPPSVPPTASPVMPPQTQSPGQPPQPLPMVLHQKQNRITPIQ
KPRGLDPVEILQEREYRLQARITHRIQELEHLPGSLAGDLRTKANIELKALRLLNFQRQL
RQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYL
NSILQHAKDFKEYHRSITAKLQKATKAVATYHANTEREQKKENERIEKERMSRLMAEDEE
GYRKLIDQKKDKRLAYLLQQTDEYVANLTDLVRAHKADQALKDKKKKKKKKKKKKKKPES
GESQPPALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGLDAPRAGQLDTWLEMNPGYEV
APRSDSEDSGSEEEEEEEEEPQPSQAPTEEKKKIPDPDTEDVSEVDVRYIIEGAKQDVDD
EYNSAEAAFARGLQSYYAVAHAVTETVDKQSTLLVNGQLKHYQIKGLEWLVSLYNNNLNG
ILADEMGLGKTIQTIGLITYLMEHKRINGPFLIIVPLSTLSNWVYEFDKWAPSVVKVSYK
GSPQARRAFLPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTV
VLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCTTFEQWFNAPFAMTGEKVD
LNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQRVLYRHMQAKG
VLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQQIEESFSEHLGFTGGVVSGPDL
YRAAGKFELLDRILPKLMVTNHKVLLFCQMTSTMTIMEDYFGWRNFKYLRLDGTTKAEDR
GMLLKTFNDPDSQYFVFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQDRAHRIGQ
RNEVRVLRLCTVQSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE
QDEVGAPGGWRAGGALEEDEVPDDETVNQMIARSEEEFDQFMRMDLDRRREDARNPKRKP
RLMEDDELPTWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEDG
NLEDLEEEVRHKKTTRKRKRDRDDMPGPATPSSSGGGGGRSRDKDEEVKKAKKRGRPPAE
KLSPNPPSLTKKMKKVVDTVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRK
IKERIRGHKYRSLNDLEKDVMLLCSNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEKE
EESEGEDSEEEEEEVDEGSESESRSVKVKIKLGRKEKEGRGKGQRRRGRGSRAKPVVSDD
DSEEEQEEAGSASGSEED
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccccggacccccccatgggagggacgcctaggctgggcccgtctccaagaccg
gggccttctccaggagccatgggccccagcccttccccaggctctgctcatagcatgatg
ggacccagcccaggtcccccagcctctggacactcccacccacaacaggggccctcagga
tatcctcaggagaatatgcatcagatgcacaaacctatggaaggcatgcaggagaagggc
atatctgatgaccctcgctatggaccaatgaagagcatgggcatgagaccaggtggaggc
cacattggaatgggaccccctcctagccccatggatcaacatttccaaggctacccctct
ctactggggggttctgagcactctcccagccctgtgccagccaacggccctccccccggc
cccatgatgccctctggcccaggtgtccccatggagggcggtgacccccagtccatgggc
cagcagaaccgcgttggggtcccaggtccgagtggtggttctgggccaggcggggttggg
ccgggtggacccacccccttcaaccaaaaccagctgcaccagctcagggcccagatcatg
gcctacaagatgctggctcgcagccagcccctgccagaccacctgcagatggctgtgcag
ggcaagaggcccatgccagggatgcagcagcagccagggatgcccaacatgccgccttcc
tctgggcctggggcggggcctggacagccaccagcaaactacaacagacaacttggaatg
gtaggcccaaacatgcctcctccaggaccctcaggtgttccccctggtatgcagggacag
cccaccaatggaccccctaaacaatggcccgaagggcccatggtgaatgctgctgctcca
tccagtgccccccagaagctgattccccctcagcccactggcagaccctcccctgctccc
ccctccgtgccccctactgcctccccggtcatgcccccccagacccaatcccctgggcag
cccccccagcccttgcccatggtgctgcaccagaaacagaaccgcatcacgcccatccag
aagccccgtggtctggacccagtggagatcctccaggagagagagtacaggctgcaggct
cgtatcacccaccgtatccaggagctggagcatctaccagggtctctggccggagacctg
cgcaccaaagccaacattgagctcaaggccctgaggctgctaaatttccagagacagctg
cgtcaggaggtagtggtgtgtatgcgtcgtgacacggccctggagacggccctcaacgct
aaggcctacaagcgcagcaagcgccagtccctccgcgaggcccgcatcacagagaaactg
gagaagcaacaaaagattgaacaggagcgtaaacgacgccagaaacaccaggaatacctt
aacagcatcctgcagcatgctaaagacttcaaggagtaccaccgctccatcacagccaag
ctccagaaggccaccaaagctgtggccacctaccacgccaacactgagcgcgagcagaag
aaggagaacgagcgcattgagaaggagagaatgagtaggctgatggctgaagatgaggag
ggctaccgtaagctcattgaccagaagaaagacaagcgtctggcctacctgctgcagcag
acagacgagtacgtggccaacctcaccgatctggtcagagcccacaaggctgatcaggcc
ctcaaggacaagaagaagaagaagaaaaagaagaagaagaagaagaagaagccagagagt
ggggagagccagcctcctgccctgggacccgacggagagcctctggatgagaccagtcag
atgagtgacctgcctgtgaaggtgatccatgtagacagtgggaagatcctgacggggctg
gacgcgccccgggctggccagctggacacctggctggagatgaaccctgggtatgaagtg
gctcctcgttcagacagcgaggacagtggctcagaggaagaggaggaggaagaggaggag
ccccagccctcccaggctcccactgaggagaaaaagaagatcccagaccccgacacagag
gacgtgtctgaggtcgacgtccgctacatcatcgagggagccaagcaggatgtggatgat
gagtataacagtgccgaggcggcgttcgcccgaggcctgcagtcttactatgctgtggcc
cacgccgtcactgagacggtggacaaacagtccacactgctggtcaacgggcagctcaaa
cattaccagatcaagggcttggagtggctggtgtctctgtacaacaacaacctgaatggg
atcctggctgatgagatgggtctgggcaagaccatccagaccatcggcctcatcacctac
ctcatggagcacaagcgcatcaacggccccttcctcatcatcgtgcccctctcaactctg
tccaactgggtgtatgagtttgataagtgggctccatctgtggtgaaagtctcttacaaa
ggctcaccacaagctcgccgggcattcctccccatcctgcgcagcggcaagttcaacgta
ctgctcaccacctacgagtacatcatcaaagacaagcaagtgctggctaagctgcgatgg
aagtacatgatagtggacgagggccaccgtatgaaaaaccaccactgtaagctgactgtg
gttctgaacacccactacctggccccgcggcgtctgctgctgaccggcaccccgctgcag
aacaagctgccggagctttgggccctgctcaacttcctgctgccgaccatcttcaagtcc
tgcacaaccttcgagcagtggttcaacgcccccttcgccatgaccggagagaaggtggat
ctgaacgaggaagagaccatcctgattatccgtcgtttgcacaaagtgctccgccccttc
ctgctgcgcagactgaaaaaggaagtggagtcccagctgcctgagaaggtggagtatgtg
atcaagtgtgacatgtcggccctgcagagagtgctgtacagacacatgcaggctaagggt
gtgctgctcaccgacggctctgagaaagacaagaagggtaaaggaggcaccaagaccctg
atgaacaccatcatgcagctgaggaagatctgtaaccatccctacatgttccagcagatc
gaggagtccttctctgagcatttgggattcactggaggcgtagtgtctggacctgacctg
taccgcgcagctgggaagtttgagctgctagaccgtatcctgcccaagctgatggtcacc
aaccacaaggtcctgctcttctgtcagatgacttccaccatgaccatcatggaggactac
tttggctggcgcaactttaagtacctgcgtctggacggaaccactaaggctgaggatcgt
gggatgcttttgaagaccttcaatgaccccgactctcagtactttgtgttcctgctcagc
accagggccggcgggctgggcctcaaccttcagtctgctgacactgtggtcatctttgac
tccgactggaacccacatcaggacctgcaggcccaggacagagcccaccgtatcgggcag
cggaacgaggtgcgtgtgttgcgtctctgcaccgttcaaagtgtggaggagaagatcctg
gcggcggccaagtacaagctgaatgtggaccagaaggtcatccaggccggcatgttcgac
cagaagtcgtcgagtcatgagcgccgtgccttcctgcaggccatcctggagcatgaggaa
caggacgaggtcggggccccggggggctggcgcgctgggggggcgttggaggaggacgag
gtgcctgatgatgagactgtcaaccagatgattgccaggagcgaggaggagtttgaccag
ttcatgcgtatggacctggaccggcgccgtgaggacgcccgcaaccccaagagaaagccc
cgtctgatggaggatgacgagctgcccacctggatcctaaaggatgatgccgaggtggag
aggctcacctgtgaggaggaggaggagaagatgtttggtcgcggctctcgccagcgcaag
gaggtggactacagcgactcactcacagagaagcagtggctcaaggccatagaggacggt
aatctggaggacctcgaggaggaggtgcgtcacaagaagacgacccggaagcgcaagcga
gaccgtgacgacatgcccggcccagccacgcccagctccagcggtggtggcggtggtcgc
agccgtgacaaggatgaggaggtcaagaaggccaagaaacgcgggcgccctccggctgaa
aaactgtcccctaaccccccatccctcaccaagaagatgaaaaaggtggtggacactgtc
atcaagtacaaggacggcagcaatgggcgccagctgagtgaagtcttcatccagctgcca
tcccgcaaggagctgcctgagtactacgagctcatccgcaagcctgtcgacttcaggaag
attaaggagaggatccgcggccataagtaccgcagcctgaatgacctggagaaggatgtg
atgctgctgtgtagtaacgctcagaccttcaacctggagggctctctgatctatgaggac
tccatcgtactgcagtcagtcttcaccagtgtcaggcagaagattgaaaaggagaaggag
gaggagagtgagggagaggacagtgaggaagaagaggaggaggtggacgaaggctctgag
tctgaatctcgttcagtgaaggtgaagattaagctggggaggaaggagaaggagggcaga
gggaagggccagcgccggaggggccgtggctcccgggccaaacctgtagtgagcgacgac
gacagcgaggaggaacaggaggaggcgggttcggccagcggcagtgaggaggactga
DBGET
integrated database retrieval system
