Salvelinus namaycush (lake trout): 120039048
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Entry
120039048 CDS
T07522
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120039048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120039048
03009 Ribosome biogenesis [BR:
snh03009
]
120039048
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120039048
Spliceosome [BR:
snh03041
]
Complex A
U1 snRNP components
U1 related factors
120039048
Complex B
120039048
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Helicases
120039048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120039048
NCBI-ProteinID:
XP_038840506
UniProt:
A0A8U0Q9V6
LinkDB
All DBs
Position
Sna3:76392110..76397570
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AA seq
617 aa
AA seq
DB search
MPGFSDRDRGRDRGYGSGPPRFGGGGRGGGGGGGKFGNPGDRLRKKHWNLDELSKFDKNF
YQEHPDVTRRSPQEVAQYRSTKAVTVKGRDCPNPIMKFHEASFPTYVMDVINKAGWSEPT
PIQAQGWPLALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRE
LAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQLRDLDRGVEICIATPGRLIDFLEAGKTN
MRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYV
QINVGALQLSANHNILQIVDVCNDGEKEDKLLRLLEEIMSEKENKTIIFTETKRRCDEIT
RRMRRDGWPAMGIHGDKSQQERDWVLNEFKFGKAPILIATDVASRGLDVEDVKFVINFDY
PNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMRQASDLVAVLREANQAINPKLLQMADRG
GHSRGGRGGSGFRDDRRDRYSSGGRRDFSSFRDRENDRGFDSGPKKVFGTNSQSGGYGAS
GFDKSGNGFGGGYGTNGQSNYGASQAGAFPTQNFQAPQFSANQGGAQSGMSHQQFPFTQQ
QAPQPMVPYPMPPQFPQ
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggtagagatagaggttatggcagcggaccacct
cgttttggaggcggtggaagaggaggaggtggtggtggggggaagtttggtaatcccggt
gatagactgcgcaagaagcactggaaccttgacgagctctctaaatttgacaagaacttt
taccaagagcaccccgatgttactcggagatctccgcaagaggttgcacagtacagaagt
actaaagcggttactgtgaaggggagggactgccctaatccaattatgaagttccatgaa
gccagttttccaacctatgtgatggatgtcattaacaaagcaggctggtcagaaccaaca
ccgatccaagcacagggttggccactggcattgagtggcaaggacatggttggtattgca
cagacaggctctgggaaaactctctcgtacttgttgccagcaatcgtgcacattaatcac
cagcctttcctggaacgtggagatggccctatttgcttagtgcttgccccgacccgtgag
ctggctcagcaggtccagcaggtggcagcagagtatggcagagcttctcgcctgaagtct
gtctgtgtttatgggggcgcgcccaaagggccacagctccgtgacctggatagaggtgtg
gagatttgcattgccacacctggcaggcttattgacttcctggaggcaggaaagaccaac
atgcgcagatgcacttacctggtcctggatgaggctgaccgaatgctcgacatgggtttc
gaaccacaaatccgaaaaattgtggaccaaatcagacctgaccgacagacactgatgtgg
agtgccacctggcccaaagaggtgcgccagctggcagaggacttcctgaaggactacgtc
cagatcaatgtgggtgctctgcagctgagtgccaaccacaacatcttacagattgtggat
gtttgcaatgatggcgagaaagaagacaaactcctccgcctactagaggagatcatgagt
gagaaggagaacaaaaccatcatctttacagagaccaagaggagatgtgacgagatcact
aggaggatgaggcgggatggttggccagcaatgggcatccatggagacaagagccagcag
gagagggactgggtgctcaatgagttcaagttcggaaaggcgccaattctcattgccaca
gatgtcgcctccaggggtctagatgttgaagacgtgaaatttgtcatcaactttgactac
cccaacaactctgaggactatatccaccgcatcggcagaactgcccggagccaaaagact
ggcacagcctacaccttcttcacccccaacaacatgaggcaggccagcgacctcgttgct
gtgctccgtgaggccaaccaggccatcaaccctaaactcctccagatggcggacagagga
ggtcattcaaggggaggcagaggtggtagtggatttagggatgaccgccgggacaggtac
tcctccgggggcaggcgtgacttcagtagctttagggacagggaaaatgatagaggtttt
gacagtggaccaaagaaggtctttggcacaaattcacagagcggaggctatggggcaagt
ggctttgacaaaagcggcaatggttttggtggcggctacggcaccaacggccagtcaaac
tatggtgccagccaggccggggcgttcccaacgcagaacttccaggccccacagtttagt
gccaaccagggcggtgcacagagtggcatgagccatcaacagttccccttcacacagcaa
caagcaccacagcccatggtgccttacccaatgccccctcaattcccacagtaa
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