Salvelinus namaycush (lake trout): 120039052
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Entry
120039052 CDS
T07522
Name
(RefSeq) protocadherin-20-like
KO
K16498
protocadherin delta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120039052
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120039052
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120039052
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120039052
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120039052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
120039052
NCBI-ProteinID:
XP_038840507
UniProt:
A0A8U0U817
LinkDB
All DBs
Position
Unknown
AA seq
893 aa
AA seq
DB search
MFNKTGPGLSSRGVLWGLCILLLYTSPLSSFANFSQAKELVYKIKEGLPSGTLIGSMGSD
LHLDLSLDPHVSFNLPQKKPSDQYVTLNSTTGQLFTSGNDIDRETLCPDASEYNEGCVLS
LDVFVLPQQYFQLVKVKILVEDVNDNRPRFPTGEIRVSVPENTQVNARFAVEQSATDPDL
GFHGVQTYWLVNDFGVFTLDVEENEGGELTPFLIVTDELDRERQDEYVTDIIAEDGGLPP
LLGTATLRIIITDVNDNCPQFTESQVNVTLYGNTTKGEHLSRLHAFDPDQGANAVISYAY
SDRVPREARALFHLDRITGVIKLSGQINTATGKFYKLTVLANGPGCVPAVAMVTVHVIRV
ASGPPVIMPRYIAAEKDGVVTMKESEPPFSPIAFFTVKNTDQRGQGTECLLEGSGPFRLS
PYKLFKNEYLLETTEPLDYEQRQDYELTVVLRNPRGLVINTFIKILVLDENDNAPVFKQS
LYEVSMEENNPPNSFLSQIQATDQDSEARGEVIYLLGSDAPSVFLLDRLTGVLTVSTSLD
REEKQTFRFMVRAVDRGTPRRESIATVVITVLDRNDNSPRFINKDFTFFVPENFPGFGEI
GVLSVTDADAGENGWVALSILNGSDIFVIDTGRGALRARTPLDREQQGTYYLWIEAVDGG
EPSLSCLTMVTVLLLDVNDNPPVVLFPQSNQSYMLVLPSTLPGTSITEVYAVDKDTGMNA
VIAYSIIKRKGDEPGSFDIDPDTGNITLNRELSDRGLYSLLVKVSDHGQPEPLHSTVLVN
LFVNETVSNESYIQSLLSGEAEIQTEEKPWYVGKLTERPDREDVLPCQPLLVALSVTCLG
LFCIVVTLTAYICCKKLKKWKKHQMKRLEVEMPLKMNGDLQDVDRKRMEISNI
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataaaacaggacccggacttagttcgagaggagtactgtggggtttgtgcata
ctcctcctttacaccagccctctctcctcttttgctaatttcagccaagcgaaagagctg
gtctataaaataaaagaaggattaccctcagggacactcatagggtccatgggctccgac
ttacacttggatttatccctcgatccccatgtttcattcaatctgccccagaagaagcct
agtgatcagtatgtcactctgaacagcactacgggacagctgtttacgtctgggaatgac
atcgacagggagacgctctgcccggacgcctcagagtacaacgagggctgcgtcctctcc
ctggatgtgttcgttctaccccagcagtacttccagctggttaaggtcaagatcttggtc
gaggatgttaacgataaccggccgcgcttcccgacgggcgagattagggtttccgtcccg
gagaacacccaggtcaacgcgaggtttgcggtggagcagtcggcgacggaccctgatctg
gggtttcacggggtccagacttactggctggtgaacgactttggggtgttcactctggac
gtagaggagaacgaggggggtgagctgacacccttcctcatcgtgaccgacgagctggac
cgggaacgacaggacgagtacgtaacggatattatagcagaggacggcgggttaccacct
cttcttggcaccgccacgttacggattataatcactgacgtcaacgataactgtcctcag
ttcacagagtcacaggtcaacgtgacgctctacgggaatacgactaaaggagagcacctg
tccaggttacacgccttcgaccccgaccagggcgccaacgccgtaatcagctatgcgtac
agcgaccgcgttccccgggaggctagagctctgttccatctggaccggattaccggggtg
atcaaactgtccggtcagatcaacaccgcaaccgggaagttctacaaactcactgtcctc
gccaacgggcctgggtgcgtccctgccgttgccatggtgacggtgcacgtgatccgggta
gcttccggtccgccggttattatgccgcgctacatcgcggcggagaaagacggtgtggtc
acgatgaaggagtccgaaccgccgttttcgccaatcgcgtttttcaccgtgaagaacacg
gaccagagaggacaggggacggaatgcctgcttgaaggatctggcccgttccgactgtca
ccttacaaactgtttaagaacgagtatctgttagagacgacggagccgctggactacgag
cagaggcaggactacgagctgactgtagtgctcaggaaccccagaggtctcgtcatcaac
accttcattaagatcctggttctggatgagaacgacaacgcgccggtcttcaaacagtct
ctgtatgaggtctctatggaggagaataaccctcccaacagcttcctgtcccagatccag
gccacagaccaggacagtgaggccagaggagaggtcatctacctgctggggtcagacgct
ccctccgttttcctcctggacaggctgaccggtgtgctgaccgtgtccacatctctggac
cgagaagagaagcagaccttcaggttcatggttcgggcggtggaccgagggacccccagg
agagagtctatagctacagtggtcatcactgtgctagaccgcaatgacaacagcccgcgc
ttcatcaataaagatttcacgttctttgtgccggagaatttcccggggtttggcgagatc
ggcgttctctcggtaacggacgcggacgcaggcgagaacggctgggtggcactctccatc
ctcaacggcagcgacatcttcgtgatcgacacgggacgcggcgctctaagggcccgtacc
cctctggaccgggagcaacaggggacgtactacctctggatcgaggcagtcgacggaggg
gaaccgtctctctcctgcctcaccatggttaccgtcctcctccttgacgtaaacgataac
cctcccgttgtcttgttcccccagtctaaccagtcctacatgctggtgttacccagcacc
ctgccagggacctccatcacagaggtgtacgccgtggataaagacacaggaatgaacgct
gttatcgcctacagcatcatcaagaggaagggcgacgagccgggatcgtttgatatcgac
ccggacacagggaacatcacgttgaacagagaactcagtgaccgcggtctctatagtcta
ctggttaaagtctcggaccacggtcagcctgaacctctccactccacggtcctggtcaac
ctctttgtcaacgagacggtttctaacgagagctatatccagagtcttctcagcggggag
gctgagatccagacggaggagaagccgtggtacgtggggaagctgacagagaggcctgac
agggaggacgtgttgccctgtcagccgctactcgtagctctgtcagtaacctgtctggga
ctgttctgcatcgtcgtcacattgaccgcttatatatgctgcaagaaactgaagaaatgg
aagaaacatcaaatgaaaagactagaggttgaaatgcctttgaagatgaacggtgacttg
caggacgtagatagaaagcgaatggaaatctcaaacatttga
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