Salvelinus namaycush (lake trout): 120039349
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Entry
120039349 CDS
T07522
Name
(RefSeq) ATP-dependent DNA helicase Q5-like
KO
K10902
ATP-dependent DNA helicase Q5 [EC:
5.6.2.4
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
snh03400
]
120039349
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
120039349
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecQ family DNA helicases
120039349
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ5
RecQ_Zn_bind
TFIIS_M
ResIII
SRI
Motif
Other DBs
NCBI-GeneID:
120039349
NCBI-ProteinID:
XP_038840712
UniProt:
A0A8U0QDS2
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All DBs
Position
Sna3:77441588..77455532
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AA seq
1035 aa
AA seq
DB search
MTSIKKALKNNFGFDKFRSQKQEDVVKAVVKGDRDVFVCMPTGAGKSLCYQLPAVLAKGI
TLVISPLIALIQDQVDHLRDLNIPACSINSKLPAGERRLILADLESESPRLKLLYITPEM
VASPAFQPCLTGLLSRSLLSYLAVDEAHCVSQWGHDFRPDYLKLGSLRARLPGVPCVALT
ATAPQKVQEDIAKSLRLRSPLSFATPVFRSNLHYEVVYRELLEDPYKHLHAFIRETLTLG
EGPKGQGCGIVYCRTREGCETVAYQLTKLGVLAKPYHAGLKAGDRTEAQTDWMQGKVLVI
VATISFGMGVDKSNVRFVAHWNLAKSLASYYQESGRAGRDGLPSSCRTYYSPKDREQLNF
LIRKEVACKQAKRGSEKDQDKASITDFEAMVSFCEQEGCRHATISKFFGDQKPDCAGACD
YCRDPKAVRAQLEKGATLCTKTGAARSTQPRGPFGFDRDLYAGGRKGYGFERHDEEGWES
GGDDDGSEHRRKEFGDLFKKQIKLRKVSEGHTDSFIPPDDNCPLREASSQKIPRLTVKAR
EHCVALLQEALNNHQVAAADTHSSDTLSLAVDIEHEVFKITKSSNLYKAAVLKRVSEMKK
GGAASAGGGRGEGTSGSGESTEIKTESKDEAASSSSSLTEEQQGFTPASQIYSLKRKRIG
AGLRGSSNPFQTASELLRASNCEGSTTGPGANRGTGSGGPDYLAGSGESAGEEERGKRKE
TKTGDTAPTISSSIRAKASAVSAFLNSPTKTGGKALSKKQKLAEAAKNSRNITQYFGKKP
IEKSQEVEIRTNDVSSQAFSIPPQSLPTQEITPATVSMDTIPMDTSPMEIIPTETIPIET
IPIDTIPTETNNLDNDDEEVKEEAKLDSITVQNAHESKAKSLLKLRLCEDSEERKALPPT
KRSCPLQDSRKKVTFNPNVQETVLEPGSPSKAPKPVSLKEVADIVVRCLDPFYTQGKFAT
KELFKSFARYLSHLLAEGRSRGRGRVKMQAKNLIKKFFSGVKRCESEADWKHLKGPHSTE
RQRDVNTEGWEEAGL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgacttccattaaaaaggcgttaaaaaacaattttgggttcgataagttccgatcccag
aagcaggaggacgttgttaaagcagttgttaaaggtgacagggatgtttttgtgtgcatg
cccaccggggcagggaagtccctctgctaccagcttcctgcagtgttggctaagggtatt
accttggtcatatcccctcttatcgctctcatccaggaccaagtggaccacctaagggac
ctgaacattcctgcatgctccatcaactccaagctccctgcaggggagcgccgtctgatc
ctggctgatctggagagtgagagccccaggttgaagctgctttacatcaccccagagatg
gtggcctcccctgccttccagccctgccttacaggcctgctctcccggagcctcctctcc
tacctggctgtggacgaggctcactgtgtctcccagtgggggcatgacttcagaccagac
tacctcaaactgggcagtctgcgtgcccgtctgcccggggtaccctgcgtggcgctgacg
gccacggcaccccagaaggtgcaggaggacatagcaaagtccctgaggctgcgatcaccg
ctgtcctttgccacacctgtgtttcgcagtaacctgcattatgaggtggtgtacagggag
ctactggaggacccctacaagcacctgcatgccttcatcagggagaccctgaccctgggg
gaaggccccaaaggacagggttgtggaattgtgtactgtcggaccagagaaggctgtgag
acggtggcttaccaactgactaagctgggagtcctggccaagccttaccatgcagggttg
aaggcaggagatcgcacagaggctcagactgattggatgcagggtaaggtgcttgtcatt
gtggcaacgatcagctttggcatgggggtggacaaatctaatgtcaggtttgtggcccac
tggaaccttgccaagtcacttgccagttactaccaggaatctgggcgtgcggggcgagat
gggctgccctcttcctgcaggacgtactactcccccaaggacagggagcagttgaacttc
ctcatccgcaaggaggtggcctgcaaacaggcaaagcgtggctctgagaaagatcaggac
aaggcttccatcacagacttcgaggccatggtgtcattctgtgagcaagagggctgccgc
catgccaccatctccaagttctttggggaccagaagccggactgtgcgggagcctgtgac
tactgtcgtgaccccaaggctgtgcgggcccagctggagaagggggctactttgtgcacc
aagactggagcagctcggagcacacagcccaggggcccgtttgggtttgaccgtgacctc
tatgccggggggaggaagggctacggctttgagaggcatgatgaggagggctgggagagc
ggaggtgatgatgatggctccgaacatcggaggaaagagtttggagatctcttcaagaaa
caaattaagctgcgcaaggtgtctgagggacacacagattcatttatccccccagatgat
aactgcccactcagggaggccagcagccagaaaatccccaggctcactgtcaaggcccgg
gagcactgtgtggccctgttacaggaggctctgaacaaccaccaggtggcagcagcagac
acacacagctctgacacactctccttggcagtggatattgaacatgaggtcttcaagatc
acaaagtcttccaacctgtacaaagcagctgtcctgaagagagtatcagagatgaagaag
ggaggggctgcctctgcaggaggaggaagaggagaagggaccagcggctctggggaatcc
acagagataaagactgaatccaaagacgaagcagcctcctcctcttcctccttgactgag
gagcagcagggcttcacgcccgcctcacagatctactcactaaagcggaagagaatagga
gcaggtctgaggggctcctccaaccccttccagactgccagtgagctgctgagggcctct
aactgtgagggctccactacaggtccaggggccaacagggggacagggagcgggggccct
gactacctggctgggtctggagagtcagccggtgaggaggagagggggaagaggaaggag
acaaagactggagatacagcaccaaccatcagctcctccatcagagctaaagccagtgca
gtctctgccttcctgaacagtcccaccaagacaggaggcaaggccctgagcaagaagcag
aagctagcagaggctgctaagaactcccgcaacattacccagtactttgggaagaaaccg
attgaaaagagtcaagaggtggagataagaaccaatgatgtgtcgtctcaggccttttca
ataccaccccagtcactccccactcaggaaatcacacctgctactgtctccatggatacc
atccctatggacactagtcccatggaaatcatccccacggaaaccatccccattgaaact
atccctattgacactatccccacagaaaccaacaacttggataatgatgatgaggaggtt
aaagaggaagctaaactggactctatcacagtgcaaaatgcacatgaaagcaaggctaaa
tcgttgctaaaactaaggctatgtgaggacagtgaagagaggaaggccctccccccaacc
aagcgcagctgccccctacaggacagcaggaagaaggtgacctttaacccaaacgtccag
gagactgtactggagccagggagcccaagcaaagcccccaagcctgtgtctttgaaggag
gtggctgacatcgtggtgcgctgtctagaccccttctatacacagggcaagtttgccacc
aaggagctattcaagtcatttgcccgctacttgtctcatctactagcagaggggaggagt
aggggaagaggtcgagtgaaaatgcaggccaagaatctgataaagaagttcttcagcggt
gtgaagcgctgtgagagtgaagcagactggaagcacctgaagggaccacacagcactgag
agacagagggatgtgaacacagagggatgggaggaggcgggactatga
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