KEGG   Salvelinus namaycush (lake trout): 120039442
Entry
120039442         CDS       T07522                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
snh  Salvelinus namaycush (lake trout)
Pathway
snh03013  Nucleocytoplasmic transport
snh03015  mRNA surveillance pathway
snh03040  Spliceosome
snh05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:snh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    120039442 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    120039442 (alyref)
   03015 mRNA surveillance pathway
    120039442 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    120039442 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:snh03019]
    120039442 (alyref)
   03041 Spliceosome [BR:snh03041]
    120039442 (alyref)
Messenger RNA biogenesis [BR:snh03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     120039442 (alyref)
    TREX complex
     120039442 (alyref)
Spliceosome [BR:snh03041]
 Complex C
  Other components
   EJC/TREX
    120039442 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    120039442 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_occluded
Other DBs
NCBI-GeneID: 120039442
NCBI-ProteinID: XP_038840769
UniProt: A0A8U0QF86
LinkDB
Position
Sna3:complement(77480577..77484073)
AA seq 268 aa
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGGGRGGGVGRGAVGGGFGGRGGG
SGPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYGNHGFNASVGGGGGGAGVETGGKLL
VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV
PLDGRPMNIQLVTSQIDTQRRPPMQGMNRGGGGMNRGRGGGFRGMQRGRGAGRGGGRGRG
GRGGSTKPLSAEELDAQLDAYNARMETS
NT seq 807 nt   +upstreamnt  +downstreamnt
atggccgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgggggc
cgaggtggtggtgttggccgtggagcagttggtggaggctttgggggccgaggtggagga
tcgggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatac
agcaggcccaagcagcttcctgataaatggcaacacgacatgtacggcaatcatggcttc
aatgccagtgttgggggcggcgggggtggagctggtgtggaaaccggagggaagcttctt
gtctccaatctcgactttggcgtttcagacgcagatattcaggagctctttgcagagttt
ggtacactgaagaaggcagctgttcactatgaccggtcgggcaggagcttaggcactgca
gacgtccactttgagaggaaggcagatgctctaaaagctatgaaacagtacaacggtgta
ccacttgatgggcgtcccatgaacatacaactcgtcacatcacagatcgacacacaaaga
cggccacccatgcagggtatgaaccgaggtggtggtggcatgaacaggggtcgtggcggt
gggtttagagggatgcagagaggacgtggagcaggtcgtggaggaggcaggggccgaggt
ggccgcgggggaagcactaagccactttctgctgaagagctggatgcccagctagatgcc
tacaatgccaggatggaaacaagctaa

DBGET integrated database retrieval system