Salvelinus namaycush (lake trout): 120039442
Help
Entry
120039442 CDS
T07522
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
KO
K12881
THO complex subunit 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
snh03015
mRNA surveillance pathway
snh03040
Spliceosome
snh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120039442 (alyref)
09122 Translation
03013 Nucleocytoplasmic transport
120039442 (alyref)
03015 mRNA surveillance pathway
120039442 (alyref)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
120039442 (alyref)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120039442 (alyref)
03041 Spliceosome [BR:
snh03041
]
120039442 (alyref)
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
120039442 (alyref)
TREX complex
120039442 (alyref)
Spliceosome [BR:
snh03041
]
Complex C
Other components
EJC/TREX
120039442 (alyref)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
120039442 (alyref)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
120039442
NCBI-ProteinID:
XP_038840769
UniProt:
A0A8U0QF86
LinkDB
All DBs
Position
Sna3:complement(77480577..77484073)
Genome browser
AA seq
268 aa
AA seq
DB search
MADKMDMSLDDIIKQNRQQRGGAGGRGGGRGRGRGGSGGGRGGGVGRGAVGGGFGGRGGG
SGPMRNRPNLSRGRARPTPYSRPKQLPDKWQHDMYGNHGFNASVGGGGGGAGVETGGKLL
VSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGV
PLDGRPMNIQLVTSQIDTQRRPPMQGMNRGGGGMNRGRGGGFRGMQRGRGAGRGGGRGRG
GRGGSTKPLSAEELDAQLDAYNARMETS
NT seq
807 nt
NT seq
+upstream
nt +downstream
nt
atggccgataagatggatatgtctctagacgacatcatcaagcagaacaggcagcagaga
gggggcgcaggaggccgtggtggtggaagaggccgtggccggggaggctctggcgggggc
cgaggtggtggtgttggccgtggagcagttggtggaggctttgggggccgaggtggagga
tcgggccccatgaggaaccgaccgaacctgagccgtggcagagcaagacctacgccatac
agcaggcccaagcagcttcctgataaatggcaacacgacatgtacggcaatcatggcttc
aatgccagtgttgggggcggcgggggtggagctggtgtggaaaccggagggaagcttctt
gtctccaatctcgactttggcgtttcagacgcagatattcaggagctctttgcagagttt
ggtacactgaagaaggcagctgttcactatgaccggtcgggcaggagcttaggcactgca
gacgtccactttgagaggaaggcagatgctctaaaagctatgaaacagtacaacggtgta
ccacttgatgggcgtcccatgaacatacaactcgtcacatcacagatcgacacacaaaga
cggccacccatgcagggtatgaaccgaggtggtggtggcatgaacaggggtcgtggcggt
gggtttagagggatgcagagaggacgtggagcaggtcgtggaggaggcaggggccgaggt
ggccgcgggggaagcactaagccactttctgctgaagagctggatgcccagctagatgcc
tacaatgccaggatggaaacaagctaa
DBGET
integrated database retrieval system