Salvelinus namaycush (lake trout): 120039476
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Entry
120039476 CDS
T07522
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
120039476
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120039476
Membrane trafficking [BR:
snh04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
120039476
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
TPR-S
Motif
Other DBs
NCBI-GeneID:
120039476
NCBI-ProteinID:
XP_038840799
UniProt:
A0A8U0QFA9
LinkDB
All DBs
Position
Unknown
AA seq
874 aa
AA seq
DB search
MSVKAFELVPAVERELLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLEEHATTKGML
SYTVQKLLFKYLGLKKPVEALKAASALERIIVLCDATVSVVDMITLEPVPSGGAKIKGVA
AFCVNENPVNGDPFCVEIGVISARRRTVQIYMVYEDRVQLVKEVNTPEQPCAVSLDGYFL
CLALSTQYMILNYSTGAAQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVNWSESVIGAAVCFPYVVALDEGFVTVHSMLDQQLKQTLSFRDGHILQDFEGKVVLA
STKAVYVLVPLPLERQIQELLAGHRVEEALALTEGARRNIPKDKFQILHKRILQQAGFIQ
FGQLQFLEAKEHFRTGQLDVRELISLYPLLLPASSSFTRCHPPLHEFADLNHLAQGDQEK
VQRCKRFLITYLGEVRSTEGANGCREDVDTALLKLYAEQDHESLLDLLASPNACLLADSA
PWLEKHHKYFALGLLYHYNGQDSAALQLWVRVVNGDLQDSTRSDLYDYIVDFLSFCSNPD
LVWKYADWALQRDQTVGVQIFTRRPVGQDQVKEQKDQVNPDDVITYLGKHSQALLLYLEH
LVLGRRIQKEKLHTHLAVQYTDRVLSLLSQSPTVDQQVSIARDKLQLLLRESSLYRVQLL
LGKIQECDQLFLERATLHGKLEEHDKALHILVHQLKDFPAAEAYCVWGSASRDPAYQQRL
FHLLLEVYLDRDLPSSTGSGELEMAAVDLLNRHGEVFDAVRVLDLLPEGWSLQLLRPFLG
RALRGSMHAFRTSQVALGLARSENLQLQHDRLKQKRSPVLVSEKKGCVLCHNTFSEPDCV
CLPGGVPVHTHCAAQRVVRDSPTRRQLANSNNHT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcatttgagctggtccctgccgtggagcgggagctcctgatgggagac
aaggcccgcatcaacattgagtgcatcgagtgctgcggcaagcacctgtacgtgggcacc
aacgactgcttcatacatcacttcctgctggaggagcatgccacgaccaaggggatgcta
tcctacaccgtccagaagctgctgttcaagtacctgggcctgaaaaagcctgtggaggcc
ctgaaggccgcatcagcgttagaacgcatcattgtgctctgtgatgctacagttagtgtt
gttgacatgatcaccttagaacccgtgccttcgggcggggccaagattaaaggcgtggcc
gcgttctgcgtcaacgagaacccggtgaacggggacccgttctgcgtggagatcggggtg
atctcggcccggcggcgcaccgttcagatatacatggtgtacgaggacagggtgcagctg
gtgaaagaggtcaacacgccggagcagccatgtgcggtcagtctggacggttatttcctg
tgcctggccctctccacgcagtacatgatccttaactacagcacaggggccgcgcaggac
ctgttcccctacgacagcgaggagaggaagcccatcgtcaagaggatcggcagggaggag
ttcctcttggctgcccctggtggcctgggtatgtttgccaatgcagagggtatatcccag
cgtgccccagtgaactggtcagagagtgtgattggagcggcggtctgttttccctatgtg
gtggcgctagacgagggcttcgtcaccgtccacagtatgctggaccagcagctcaagcag
accctctccttcagagacggacacatcctacaggactttgaaggtaaggtggttctagcc
tccactaaggctgtgtatgtgctggtgcccctacctctggagagacagattcaggagctg
ctagctggacacagagtggaggaggctctcgcccttacagagggagccaggaggaacatt
cccaaagacaagttccagatattgcacaaaagaatcctccagcaagcaggattcatacag
tttggacagcttcagtttttagaagcgaaagaacacttcaggacaggtcagttggacgtc
cgggagttgatctccctctaccctctcctcctcccggcctcctcctccttcacccgctgc
cacccgccgctccacgagttcgccgacctcaaccacctggcgcagggggaccaggagaag
gtccagaggtgcaagaggttcctcatcacgtacctgggtgaggtgcgaagcacggagggg
gcgaacggctgccgggaggacgtggacacggctctgttgaagttgtacgctgagcaggac
cacgagagtcttcttgacctgctggcctcccccaatgcctgtttactggcagacagcgcc
ccctggctagagaaacaccacaagtattttgcactaggcctcctctaccattataacggt
caggattcagctgctctacagttgtgggtgcgggtagtgaatggggaccttcaggactct
accaggtctgatctgtatgactacattgtggacttcctgagtttctgttccaacccggac
ttggtgtggaaatatgcagactgggccctgcagagagaccagacggtaggggtgcagatc
ttcaccaggaggccggtgggtcaggaccaggttaaggagcagaaggaccaggtgaaccca
gacgacgtcatcacgtacctggggaaacacagccaggctctgctgctctacctggaacac
ctggtgctgggccgacggatacagaaagagaagctccacacccacctggcagtgcagtat
acagacagagtcctgtctctcctgtctcagtcccccacagtggaccaacaggtgtctata
gcacgggacaaactccagctcctcctcagggagtccagtctgtaccgcgtccaactacta
ctgggtaagatccaggagtgtgaccagttgtttctggagagagccacgctccacgggaaa
ctagaggagcacgataaggcgttacacatcctggtgcaccagctcaaagacttccccgct
gctgaggcctactgcgtgtggggttccgcctcccgggacccggcctaccagcagcgcctc
ttccacctccttctggaggtctatctggaccgggaccttcccagtagtaccggctccggg
gagctggagatggcagcggtggatctgttaaaccggcacggggaggtgtttgacgctgtg
cgtgtgctggacctgcttcctgaagggtggtccctgcagctgcttcgcccgttcctcgga
cgcgccctgcgggggagtatgcacgccttccgtacctcccaggttgcactggggctggcg
aggtcagagaacctacagctgcagcacgacaggttgaagcagaagagaagcccagtcctg
gtatcagagaagaaggggtgtgttctgtgccacaacaccttcagcgagccggactgtgtg
tgtcttccaggcggcgtgcccgtacacacacactgtgccgcccagagggtggtacgagac
tcgcccaccaggagacaactagccaatagcaacaaccacacatga
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