Salvelinus namaycush (lake trout): 120040159
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Entry
120040159 CDS
T07522
Name
(RefSeq) polyadenylate-binding protein 1A
KO
K13126
polyadenylate-binding protein
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03015
mRNA surveillance pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
120040159
09123 Folding, sorting and degradation
03018 RNA degradation
120040159
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120040159
03041 Spliceosome [BR:
snh03041
]
120040159
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
120040159
mRNA cycle factors
Stress granule specific factors
120040159
Spliceosome [BR:
snh03041
]
Complex C
Other components
Complex C specific factors
120040159
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RBD_RDR6
RRM_7
RRM_5
YflT
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
120040159
NCBI-ProteinID:
XP_038841335
UniProt:
A0A8U0QDT2
LinkDB
All DBs
Position
Unknown
AA seq
631 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHQDITEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLRELFGKYVPGPALSIRVMTDDSGKSRGFGFVSF
ERHEDAQRAVDEMNGKDFNGRQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYV
KNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV
ATKPLYVALAQRKEERQAHLTNQYMQRMATVRPVPNPVLNPYQPAPPSGYFMAAIPQTQN
RAAYYSTNQLAQLRPGPRWATQGVRPQHFQNMPNAMRPSAPRPQTFGAMRPSSSQVPRMM
AGQRMATQALGQRPTSAAAAAPVRMPQYKYAAGVRNPQQHMASQPQVPMQQPAVHVQGQE
PLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESL
RSKVDEAVAVLQAHQAKESAQKPTNPAGVPS
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaagcgcgcccagttacccgatggcctccctctacgtcggcgacctgcaccag
gatatcaccgaggccatgctgtacgagaagttcagccccgccgggcctatcctctcgatt
cgagtctgcagggacatgatcactcgtcgatccctcggatatgcctacgttaacttccaa
caaccagccgatgccgaacgtgccctggacaccatgaacttcgacgtcatcaaagggaga
cctctgcgtatcatgtggtctcagcgtgacccttccctgaggaagagtggagtgggcaac
attttcatcaagaacttggacaagtccattgacaacaaggccctctatgacaccttttca
gcttttggaaacatcctatcgtgcaaggtggtttgtgatgagaatggctcaaagggctat
ggctttgtgcactttgagacccaggaggctgctgaaagagccattgagaaaatgaacggc
atgctgctcaatgacagaaaagtgttcgtcggacgcttcaaatctcgcaaagagcgtgag
gctgagcttggtgccagagccagagagttcaccaatgtttacatcaagaactttggagag
gatatggacgacgagaagctgagagagctgtttgggaaatatgttccgggaccggccctg
agcatcagggtgatgacggacgacagcgggaagtccagagggttcggcttcgtcagcttt
gagaggcacgaggatgctcagagggccgtagatgagatgaacgggaaggattttaacggc
cgtcaggtctacgtgggccgcgcccagaagaagggagaacgccagacggagttgaaacgc
aagttcgaacagatgaaacaggaccgtatgacccggtaccagggggtcaacctgtacgtg
aagaatctggacgatggccttgacgacgagcgtctgaggaaggagttctctcccttcggt
accatcaccagcgccaaggtgatgatggagggtggccgcagcaagggctttggcttcgtg
tgcttctcctccccagaggaggccaccaaggccgtgacggagatgaacggtcgcatcgtg
gccaccaagccgctgtacgtggcgttggctcagaggaaagaggagcgccaggctcacctc
accaatcagtacatgcagaggatggccaccgtccggcccgtacccaacccggtcctcaac
ccttaccagcctgcccctccctcgggttacttcatggccgccatcccccagactcagaac
cgcgctgcctactactccaccaatcagctggctcagctgagaccaggcccacgctgggcc
acccagggtgtcagaccacaacacttccagaacatgcccaacgccatgcgtccgtccgcc
cccaggccgcagacctttggggccatgagaccctcgtcctcccaggtgccacgcatgatg
gccggccagagaatggccacccaggccctgggccagcgtcctaccagtgcggctgctgca
gccccagtgaggatgccccagtacaagtacgcagccggtgtgaggaacccccagcagcac
atggccagccagccccaggtgcccatgcagcagcccgctgtccatgtccagggacaggag
cctctgacggcctccatgttggcggctgctcctccacaggaacagaagcagatgctgggt
gagcgtctgttccctctcatccagaacatgcaccccagcctggctggaaagatcactggc
atgctgttggagatagacaactctgagttgctccacatgctggagtctcccgagtctctc
cgctccaaggtggacgaggctgttgctgtgctgcaggctcaccaggccaaggagtccgcc
cagaaacccaccaaccccgctggagtccccagctaa
DBGET
integrated database retrieval system
