Salvelinus namaycush (lake trout): 120041637
Help
Entry
120041637 CDS
T07522
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1I-like
KO
K04856
voltage-dependent calcium channel T type alpha-1I
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04010
MAPK signaling pathway
snh04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120041637
04020 Calcium signaling pathway
120041637
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
snh04040
]
120041637
Ion channels [BR:
snh04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120041637
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
GRP
ETRAMP
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
120041637
NCBI-ProteinID:
XP_038842431
UniProt:
A0A8U0U8A5
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
WFERISIMVILLNCVTLGMYQPCENIDCTSDRCQILQAFDAFIYIFFALEMVVKMVALGI
FGRRCYLGDTWNRLDFFIVMSGMVEYSLDLQNINLSAIRTVRVLRPLKAINRVPSMRILV
NLLLDTLPMLGNVLLLCFFVFFIFGIIGVQLWAGLLRNRCYLEENFTLSSGLTLPAPYYQ
PEEDDERPFICSLAQDNGIMSCGDVPARREGGRTCCLDREDAYHRQSLGLIPEPLVNSSA
SAVGLCINWNQYYTRCHTGHNNPHKGAINFDNIVYAWIVIFQVITLEGWVEIMYYVMDAH
SFYNFIYFIFLIIIGSFFMINLCLVVIATQFSETKQREHQLMQEQRAQCLSSSTLASLHE
PGDCYEELFQLVCHMLRKARRRSVAFKLDPVHSSQPLGNSIALAVPQNTEDCPQCATALS
LREGAGAVGDSANGEEEEGAVEETDREENHLEEKAEEGEVVKKKRKRRSCFGHCKDMWDE
MRKKLWGIVESKYFNRGIMIAILINTISMGIEHHNQPEELTNVLEISNIVFTSMFTLEMI
LKLTAFGFFAYLRNPYNIFDGIIVIISVCEIIGQSDGGLSVLRTFRLLRVIKLVRFMPAL
RRQLVVLMKTMDNVATFCMLLMLFIFIFSILGMHIFGCKFSLKTETGDTVPDRKNFDSLL
WAIVTVFQILTQEDWNMVLYNGMASTSPCAALYFVALMTFGNYVLFNLLVAILVEGFQAE
GDANRSYSEDDRSSCNFDENSDKLKDSLHLSDPKICTLTPNGHLDLSPTPTGLYTADRLT
FALGSRKNSVISLGRANLEGRANLEGRANLEGRNLCRGSSSLYHNWGRPASQTQAMWGRR
SSWNSLGRPSRALGLGLGVGGGGSLRSRSPHATHPAEQESLLSPPHPPPHLTHPPPLLAL
NFVPRRDRRALSLELPELLQVPGTPLASMLPYPRKKSFSSGLVGGGAGGEHQDCNGKAPS
AQLQLQLQLPPHPHPHPQLLTEVFPQVNTRKDREDLDDDIDYSLCFRIQKMMEVYRPEWC
ETREDWSVFLFSPQNRFRRVCQSIIAYKMFDYVVLAFIFSNCITVALERPKIMQGSLERV
FLTISNYVFTAIFVAEMTLKVVSMGLYIGEQAYLKSSWNVLDGFLVFVSLIDIVVSMAGG
AKILGVLRVLRLLRTLRPLRVISRAPGLKLVVETLITSLKPIGNIVLICCAFFIIFGILG
VQLFKGKFFYCFGPDVKNITNKSDCLQANYKWVHHKYNFDNLGQALMSLFVLASKDGWVN
IMYHGLDAVGVDQQPVINNSPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQNQEVE
EAKRREDKRRRRMEKKRRDAQKIPYYASYSPIRLWIHTLCTTYYLDLFITFIICINVITM
SLEHYSQPRSLDLVLKYCNYFFTSTFVLETLLKLTAFGFRRFFKDRWNQLDLAIVLLSVM
GITLEEIDLNASLPINPTIIRIMRVLRIARVLKLLKMAKGMRALLDTVVQALPQVGNLGL
LFMLLFFIYAALGVELFGELVCNEDYPCEGMSRHATFENFGMAFLTLFQVSTGDNWNGIM
KDTLRECPPDYGPDYSCNPSLQFISPMYFVSFVLTAQFVLINVVVAVLMKHLDDSNKEAK
EEAEMDAEIELELATGALCCMGPEGVCAGGKKGGGAGGGGGGEERGMGVPGSSSGGNMHH
HVAMTHPGTLQDPNNRDPYSPAQ
NT seq
5109 nt
NT seq
+upstream
nt +downstream
nt
tggttcgagaggatcagtatcatggtgattctgctcaactgtgtcacactggggatgtac
cagccctgtgagaacatcgactgcacttcagaccgctgccagatactacaggcgttcgat
gcgttcatctacatcttctttgcgttggagatggtggtgaagatggtggcgctgggaatc
ttcgggagacgctgttaccttggcgacacctggaacagactagacttcttcatcgtcatg
tctgggatggtggagtactcgttggacctgcagaacatcaacctctcagccatcaggaca
gtcagggtcctcagacccctcaaagccatcaatagagtacccagtatgcgtatcctggtg
aatctcctcctggacactctgcccatgctgggaaacgtcctcctgctttgtttcttcgtc
ttcttcatcttcggcatcatcggagtgcagctgtgggcgggattactgaggaaccgatgc
tacctcgaggaaaacttcaccctttcgtcaggtctgaccctgcccgccccttactaccag
ccggaggaggatgacgagcgccccttcatctgctctctggcccaggataacgggatcatg
tcgtgtggtgacgtcccggcccggagggaggggggaaggacctgctgtctggacagggag
gatgcctaccaccgccagtccctggggctcatccctgaaccactagtcaacagttcagcc
agtgcagtgggtctctgtatcaactggaaccagtactatactagatgccatactggacat
aataatccacacaagggggcgatcaacttcgataacatcgtatacgcctggattgttatc
ttccaggtgatcactctggaaggctgggtagagatcatgtactatgtaatggatgctcac
tccttctacaacttcatctacttcatcttcctcatcatcattggctcgttcttcatgatc
aacttatgtctggtggtcatcgccacccagttcagtgagaccaagcagcgggagcaccag
ctgatgcaggagcagcgggcccagtgcctgtcctcctctaccctggccagcctgcatgaa
ccgggggactgctacgaagagctcttccagctggtctgccacatgctgcgcaaggcccgc
aggagatctgtagccttcaagctggacccagtccacagctcccaacccctgggcaactcc
atcgccctggccgtccctcaaaacacagaggactgccctcagtgcgctacggcactgtca
ctcagggagggggcgggagctgtgggcgactcggccaatggggaggaggaggagggggcc
gtggaggagacggacagggaggagaaccacttggaggagaaagcggaagagggggaggta
gtgaagaagaagaggaagaggaggtcgtgttttggacactgtaaggacatgtgggatgag
atgaggaagaaactttggggcatcgtggagagcaaatacttcaatagaggaatcatgatc
gctattctcatcaatactatcagcatggggatagaacaccacaaccagccggaggagctg
actaacgtgttggagatcagtaacattgtgttcaccagtatgttcaccctggaaatgatc
ctcaagctgaccgcctttggcttcttcgcctacctgaggaacccctacaacatcttcgat
ggcatcatcgtcatcatcagtgtgtgtgagatcataggtcagtctgatggaggtctgtct
gtcctgaggaccttcagactgttgagggtgatcaagctggtgcgcttcatgccagcgtta
cgcagacagctggtcgtgctgatgaagaccatggacaacgtggccaccttctgcatgctc
ctcatgctcttcatattcatcttcagtatcctggggatgcatatctttggctgtaagttc
agtctgaagacagagactggagacactgttcctgacaggaagaactttgactctctactg
tgggccattgtcactgtgtttcagattctgactcaggaagactggaacatggtgctgtat
aatggaatggcctccacctctccctgtgctgctctctactttgtggctctaatgaccttt
ggcaactacgtcctcttcaacctgctggtggccatcttggtagagggctttcaggctgag
ggggatgccaaccggtcgtactccgaagacgacaggtcctcgtgtaactttgacgagaac
tctgacaagctgaaggactcgcttcatctctctgaccctaagatctgcaccctaaccccc
aacggtcacctggacctgtccccaacgcccacgggtctgtacacggccgacaggctcact
ttcgctctgggctcacgcaaaaacagtgtcatctctctgggcagggctaacctggagggc
agggctaacctggagggcagggctaacctggagggcaggaatctgtgtcgggggagcagc
tccctgtaccacaactggggccgccctgcatcccagacccaggcaatgtggggccggcgg
tccagctggaacagcctgggtcgcccctcccgagccttgggtctgggattgggggtagga
ggagggggtagcctgcgttcccgcagcccccacgccacccacccggccgagcaggagtcc
ctcctctccccccctcaccctcctccgcacctcacccaccctcctcccctcctggcgcta
aactttgtcccgcggcgggaccgccgggcgctgtccttggagctgccggagctcctccag
gtcccgggaacccccctggcgtcaatgctgccttaccccaggaagaagagcttctccagt
gggttggttggtggaggggctgggggggagcaccaggactgcaatgggaaggccccatca
gcccagctccagcttcagcttcagctgccgccacatccacatccccatccacagctactg
acagaggtgttccctcaggtcaacacacgcaaggacagagaggacctggacgatgacatt
gactatagtctgtgtttccgtatccagaagatgatggaagtgtacaggccagagtggtgt
gagaccagagaggactggtctgtcttcctcttctctcctcagaacaggttcaggcgggta
tgccagtccatcatagcctacaagatgtttgactatgtggtgctagcgttcatcttctcc
aactgcatcaccgtggctctggagagacccaagatcatgcagggcagcctggaaagagtc
ttcctaaccatctccaactacgtcttcacagccatctttgtagcagagatgacactcaag
gtggtgtctatgggcctgtatataggggaacaggcatatctgaaaagcagctggaacgtg
ttggacggcttcctggtctttgtgtcgttgattgacattgtggtgtcaatggcgggcggg
gctaagattctgggggtactgagggttctccgattgctccgcacactgcgccccctcagg
gtgatcagtcgagccccaggtctgaagctggtagtggagactctaataacgtctctgaaa
cctataggaaacattgtccttatctgctgtgctttcttcatcatatttggtatcctgggg
gtgcagctgttcaaagggaagttcttctactgctttggccccgacgtcaagaacatcacc
aacaagtctgactgtctgcaggccaactacaaatgggtccatcacaagtacaactttgac
aacctgggacaggctctgatgtccctgtttgtgctggcttcaaaggacggctgggtcaac
atcatgtaccatggcctggatgctgtaggggtggaccaacagccagtgatcaacaacagt
ccatggatgctcctgtacttcatctccttcctcctcatcgtcagtttcttcgttctcaac
atgtttgtgggcgtggtagtggagaacttccacaagtgccgtcagaaccaggaagtggaa
gaggctaaaaggagagaggataaacgacggagacgcatggagaagaagaggagggacgcc
cagaagatcccctactatgccagttacagccccatccgcctgtggatccacactctgtgt
accacctactacctggacctcttcatcaccttcatcatctgtatcaacgtcatcaccatg
tcactggaacactacagccagccacgatctctagatctagtgttgaagtactgtaactat
ttcttcacatccacctttgtactggagaccctcctgaagctcaccgcctttggcttccga
cgcttctttaaagacaggtggaaccagctggacctggccattgtgttgttgtccgtcatg
ggcatcactctggaggagatcgacctcaacgcatcactgcccatcaaccctaccatcata
cgcatcatgagagtactgaggatcgctagagttctgaagctgctgaagatggctaaagga
atgagagctctgctggatacggtggtccaagccctaccacaggtggggaacctgggcctg
ctcttcatgctcctgttcttcatctatgcagcactgggggttgagctgtttggagaactg
gtgtgtaatgaggactacccatgtgaggggatgagccgccatgctacctttgagaacttt
ggcatggccttcctcactctgttccaggtctccactggggacaactggaatgggatcatg
aaggacacgttgagggagtgccctccggactacgggcctgactactcctgcaaccccagc
ctgcagttcatctctcccatgtactttgtgtcctttgtgttgacggcccagttcgtcctg
atcaacgtggtggtggcggtgttgatgaagcacctggacgactccaacaaggaggccaag
gaggaggcggagatggacgctgagattgagctggagctggccacgggggccctatgctgc
atggggccggagggagtctgtgcaggagggaagaaaggtggaggagcagggggaggtgga
ggaggagaggagagagggatgggagtcccaggcagttcctccggggggaatatgcatcat
cacgtggcaatgacgcatccaggaacactgcaagatccgaacaatcgtgatccctactct
cctgcacag
DBGET
integrated database retrieval system
