Salvelinus namaycush (lake trout): 120041886
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Entry
120041886 CDS
T07522
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120041886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120041886
Enzymes [BR:
snh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
120041886
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
120041886
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
NCBP3
Motif
Other DBs
NCBI-GeneID:
120041886
NCBI-ProteinID:
XP_038842673
UniProt:
A0A8U0U7M3
LinkDB
All DBs
Position
Unknown
AA seq
697 aa
AA seq
DB search
MEVTRTNFKDSLSTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYMKLKKH
SMDFLLFQFGLCTFTYDQAESKYVIKTFNFYIFPKPFNRTSPDTKFICQSSSIDFLASQG
FDFNKVFRHGIPYLNQEEEVQLREQYEERRSQSNGSGNPSYISPNSNKGPGSIPEEHREY
IGRVVTKVESLFTTSEKTVDLEPCTGFQRKLIYQTLNSKFPKGLHVETLETEKKERYIQI
SKVDDEERKRRERQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CVLPEDLNDFKEVTQCVFPRLLDTKLMATTQPFKELINITSLAELQKQLKESPFKSPKVV
TAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGTFLTPPRAHIPSQSKLIQPFVNK
LFLMRIIDIPYLNISGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVCLSQTDQVQIAINTSRYAESYRIQTYAEYVQGRRQVRESQGHSTQSWDEDGWVKPHYT
SPSTVGAGPTGYSYGHNRPSLGKRCVSPIQEEQPTDGEAQRHADGWSGYTHSHTHSDTGS
KKIRTDGVCVRTYAGVVDSRTSEGWLKTQSGSDSSSMSPIQEEVGSEAVDDASDPAAGEW
QQQPSTNQSKKSRKNNKKRKTDGAETTSSLFDVPEVW
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgaacaaatttcaaagacagtttaagcactgtgtacagcgcaatagag
gaagcagactttctcgcaatcgatggggaattttcaggtattagcgatgggcccaacgtc
agcgcactgactaacgggttggacacgccggaggagcgctacatgaagctaaaaaagcat
tccatggacttcttgctgtttcagtttggactgtgtacgttcacatatgaccaggcagag
tccaagtacgtcataaagacttttaatttttatatattcccaaagccattcaacagaacc
tcaccagacaccaagttcatctgccagagttccagcatagacttcctggccagtcagggt
tttgacttcaacaaagtgttccgtcatgggatcccgtacctgaaccaagaagaggaagtg
cagctgcgggagcagtatgaggagaggcggagtcagagtaacggatcaggaaacccctcc
tacatctcccccaactcaaacaaaggccccggcagcatccccgaggagcacagggagtac
atcggacgagtggtaacgaaggtggagtctctgttcactacctcagagaagactgtggac
ctggagccatgcactgggtttcagaggaaactgatctaccagacactcaactccaagttc
ccaaagggccttcatgttgagaccttggagacagagaagaaagagcgttacatccagatc
agcaaggtggacgacgaggagcggaagaggagagaacggcagaaacaggagagagaacag
gaggagctgaatgacgctgtgggattctccagggtcatacacgccatctccaaatctgga
aagttggtggttggccacaacatgctgctggacgtcatgcacaccatccatcagttctac
tgcgtactgccagaggacctgaatgactttaaagaagtcactcagtgtgtcttccccagg
ctgttggacaccaagctcatggccactacgcaacctttcaaggagttgatcaacatcaca
tctctagcagagctgcagaaacagctgaaagagagccccttcaaatctccgaaagttgta
acggcggaggggttccccagctacgatacagcccaggaacagctccacgaggcgggctac
gatgcctatatcactggcctctgcttcatctccatggccaactacctaggtactttcctg
actccccccagagcccacatcccatcccaatctaaactcatccagcccttcgtcaacaaa
ctgttcctgatgaggatcatagatattccctacctcaacatcagcggaccagacctccag
cccaagagggatcatgttctgtacgtcaccttccctaaggagtggaagaccagtgacctc
taccagctgttcagtgccttcggtaacatccaggtgtcgtggattgatgacacgtcagcg
tttgtgtgtctgagtcagacagaccaggtacagatcgcgattaacaccagtcgctatgcg
gagagctaccgtatccagacgtatgcagagtacgtccagggcagacggcaggtcagggag
agccagggccactctacccagtcctgggatgaggacggctgggttaaaccccactacacc
tccccctctaccgttggtgctggtcctactggctacagctacggtcacaacaggccgtca
ttggggaagcgctgcgtcagtcctatccaggaggagcagcctacagacggagaggctcag
agacacgctgacggatggagtggctacacacactctcacacacactctgacacgggcagc
aagaagatcaggaccgacggggtttgtgtacggacgtatgcaggagtagtggacagtagg
acgtcagaaggctggctgaaaactcagtctgggtctgattcgtcgagcatgagcccgatc
caggaagaggtggggtcggaggcggtagacgatgctagtgatccggcggcgggcgaatgg
caacagcagccttctaccaatcagagcaagaagagccgcaagaacaacaagaagaggaag
accgatggtgcagagacgacttcttctctgttcgacgttcctgaggtctggtag
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