Salvelinus namaycush (lake trout): 120043062
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Entry
120043062 CDS
T07522
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120043062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120043062
03036 Chromosome and associated proteins [BR:
snh03036
]
120043062
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120043062
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
120043062
mRNA degradation factors
5'-3' decay
Decapping complex
120043062
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
120043062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
120043062
NCBI-ProteinID:
XP_038843712
UniProt:
A0A8U0QJL9
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All DBs
Position
Unknown
AA seq
516 aa
AA seq
DB search
MSTASTHNPVILGHSSQNGQLRGPVVKPAGGQGSGGGNHQTHQPSQMKQASSTINNGTGP
SSTQLAKATPTANTVIKPGDDWKRNLTLPPKDMRMRTSDVTATKGNEFEDYCLKRELLMG
IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMGI
VPTRELALQVSQICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLI
KKGVAKVNQVQMIVLDEADKLLSQDFVVMMEEVLSYLPKQRQILLYSATFPLSVQKFMNS
HLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRVSTIALTPIAVTPCTLTLK
GVTQYYLYLTLSSAAPPQLTLSSAAPPQLTLSSAAPPQLTLSSAAPPQLTLSSAAPPQLT
LSSAAPPQLTLSSAAPPQLTLSSAAPPQLTLSSAAPPQLTLSSAAPPQLTLSSAAPPQLT
LSSAAPPPADSVLCRPPPADSVLCPPQLTLSSAPPS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccagtacccataacccagtgatactgggccattccagccagaatggccag
ctccgaggcccggtggtgaagcctgcaggagggcagggcagcggaggaggaaatcatcag
acacatcagcccagccagatgaagcaggcctccagcacaatcaacaacggcactgggcct
agcagcacccagttggctaaagctacccccacagccaatactgtcatcaagcctggagat
gactggaagaggaatttgacgctccctcccaaagacatgaggatgagaacttcggacgta
acggcgactaaaggcaatgagtttgaagactactgcctgaagagggagctgctgatgggc
atctttgagatgggctgggagaaaccctctccaatacaggaggagagcatccccatagcg
ctgtctgggagggacattctggccagggccaagaacgggacaggaaagagcggagcctac
ctcattcccctattggaacgcattgacctgaagaaggactgcatacaagcgatgggcatc
gtccccaccagagaactggccttgcaggtgagccagatctgtatccagatcagcaaacac
atgggcggggtcaaagtcatggccacaacgggcggcaccaacctccgcgatgacatcatg
aggctcgacgagacagttcacgttgtgattgccacccctgggaggatcctggacctcatt
aagaagggtgtggccaaagtcaatcaggttcaaatgattgttctggacgaggcagacaag
ctgctgtcccaggactttgtggtgatgatggaagaggtactgagctacctgcccaaacag
agacagattctgctctactctgctactttccctctcagcgtgcagaagttcatgaactcc
cacctgtccaagccctacgagatcaacctgatggaggagctgaccctgaagggggtcacc
cagtattacgcctacgttacagagagacagaaggtccactgtctcaacacactcttctcc
agggtgagtactatcgccttaacccctatcgctgtaaccccgtgtaccctgaccctgaag
ggggtcacccagtattatctctacctgactctgtcctctgccgcccccccccagctgact
ctgtcctctgccgcccccccccagctgactctgtcctctgccgcccccccccagctgact
ctgtcctctgccgcccccccccagctgactctgtcctctgccgcccccccccagctgact
ctgtcctctgccgcccccccccagctgactctgtcctctgccgcccccccccagctgact
ctgtcctctgccgcccccccccagctgactctgtcctctgccgcccccccccagctgact
ctgtcctctgccgcccccccccagctgactctgtcctctgccgcccccccccagctgact
ctgtcctctgccgccccccccccagctgactctgtcctctgccgcccccccccagctgac
tctgtcctctgccccccccagctgactctgtcctctgccccccccagctga
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