Salvelinus namaycush (lake trout): 120043430
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Entry
120043430 CDS
T07522
Name
(RefSeq) mRNA-decapping enzyme 1B-like isoform X1
KO
K12611
mRNA-decapping enzyme 1B [EC:3.-.-.-]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120043430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120043430
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
120043430
mRNA degradation factors
5'-3' decay
Decapping complex
120043430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DCP1
mRNA_decap_C
WH1
Motif
Other DBs
NCBI-GeneID:
120043430
NCBI-ProteinID:
XP_038843940
UniProt:
A0A8U0QIF8
LinkDB
All DBs
Position
Unknown
AA seq
730 aa
AA seq
DB search
MTASSSGGNTCLTAKGLDISLAALQRQDPYINNIVDVASQVALYTFNNRSNEWEKTDVEG
TLFVYTRLASPRHGFTIMNRLSMENLTEPITKDLDFQLQDPFLLYRNARLAIYGIWFYDK
ADCQRIAELMKYLTKQEQALAQRGQQGQGGLVSPRALEAAGNPGKGQGVDILQMLTKARN
EYDKGGQPEPKEIGGCRVLNANPSLIKPIPVKPMERYPHPGLQERPVQDSQGEPRPLSLA
TLFGVQQPRAELVSPMAASGSRGPGSQPQGKPGGVRPAVARSLSYDDPVQSQLQEGGLIS
GSSPPQHCPAFQKLMKDAASSSQPRNQLQRGGTMEQLQRGGTMEQLQRGGPMEQLQRGGP
MEQLQRGGPMEQLQRGGPMEQLQPVSESSENRLHENGAPSVLHHRTQARQDPIQRLFQNQ
PTSTTPSMTTSAPCCPPPLQQPPPLIPGLQSAHPQPLLVDVLGFPGSQHHHVHLPPHQAQ
PFYFSPTKPPQMLVPMLPSHPSQSQPPHQPQPGHPQPQSQPCHPFHPFQHPQPLYLQPLP
GHLQPGQLTGVVSPHELLQRLQLVQQEQSLVPEPTRPSSNLAPRFHEPAPLAPSAPPAMG
QHGQQAAHSTARSLDSLADKTSAGTAAQKFQVISPQRIPATVAPTLLLSPSVFSQAKRPQ
AKASGVTHCPPGPHPPSALLAPDNPQPRGLSKSQLQATLLHLIQNDTSFLDTIYESYVHR
FSTEATASQF
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgacggcaagctcatcgggtggaaacacctgtctcactgctaaaggtttggacattagt
ctcgcagccctgcaaagacaagatccttacatcaacaacattgtagatgtggcgagtcaa
gtggcgttgtatactttcaacaaccgatcaaatgaatgggagaagactgacgtggaaggg
accctgtttgtctacacacggctagcatctcccagacatggcttcaccataatgaacagg
ctgagtatggagaacctgactgaacccatcactaaagacctggacttccagctgcaggat
ccattcctactctacaggaatgcacgcttagctatctatggcatctggttctatgataag
gcggactgccagcgcatcgcagagcttatgaagtatctgacgaaacaggaacaggcccta
gcccagcggggtcagcagggtcaggggggcttggtgtctcctcgagccctggaggcagca
gggaaccctgggaagggacaaggagtggacatcctgcagatgctgaccaaagctcgcaat
gagtatgacaagggtggtcagccagagcctaaagagataggagggtgtcgtgtccttaat
gccaaccccagcctgatcaaacctatccctgtcaaacctatggagagatatccccatcct
gggttacaggagaggcctgttcaggatagtcaaggagagcccaggcccctctctctggca
actctgttcggtgtccagcagcccagagccgagctggtctctcccatggctgcgtcaggg
tcaagaggtccagggtcccagccccaggggaagcctggaggtgtccgcccggcggtggcc
cgctccttgtcctacgatgacccagtccagtcccagctccaggaagggggtctgatctca
ggtagcagccccccgcagcactgccctgccttccagaagcttatgaaggatgccgcctcc
tcctcccagcctcggaaccagctccagcgaggcggtactatggagcagctccagcgaggg
ggtactatggagcagctccagcgagggggtcctatggagcagctccagcgagggggtcct
atggagcagctccagcgagggggtcctatggagcagctccagcgagggggtcctatggag
cagctccagcccgtctccgagtcatccgagaacagactgcatgagaacggagccccctct
gtcctccaccatcggacccaggccagacaagaccccatccagagactgttccagaaccag
cccacttccaccaccccttcaatgacgacctccgctccttgttgtcctcctcctctccag
cagcctcctcctctcatccctggtctccagtctgcccatcctcagcctctcctggtggat
gtgttgggcttccctggttctcaacaccatcacgtccacctcccccctcaccaggcccag
ccgttttacttcagccccaccaagcccccccagatgctggtccccatgttgccctcacac
ccctcccagtctcaacctccccaccaaccccagcctggtcatcctcaacctcagtcacag
ccctgtcaccctttccaccccttccagcacccccagcccttatacctccaacccctgcca
ggtcacctccagccggggcagctaactggtgtcgtctcccctcatgagctgctccagagg
ctgcagctggttcaacaggagcagagtctggtcccggagcccactaggccttcctctaac
ctggctccccgcttccacgagcctgcccctctagccccctcagcccccccagccatgggg
cagcacggccagcaggcggctcattctacagccaggtctctggacagtttggctgacaag
acctctgcaggcaccgctgctcagaagttccaggtgatctccccccagcgtatcccagcc
acggtggcacctaccctgctcctgtcccccagtgtcttctcccaggccaagcgcccccag
gccaaagcctctggggtcacccactgcccccctggccctcatcctccctcagccctcctg
gcccctgacaacccccaacccaggggcctctctaagagccagctccaggccaccctgctg
cacctcatacagaacgacacttccttcctggataccatctatgagtcctacgtccaccgc
ttctccacggaagccaccgccagccagttctga
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