Salvelinus namaycush (lake trout): 120043506
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Entry
120043506 CDS
T07522
Name
(RefSeq) protocadherin-1-like
KO
K16498
protocadherin delta 1
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
120043506
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
snh01009
]
120043506
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120043506
Protein phosphatases and associated proteins [BR:
snh01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
120043506
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120043506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
PepSY
Fibulin_C
PDGLE
Motif
Other DBs
NCBI-GeneID:
120043506
NCBI-ProteinID:
XP_038844024
UniProt:
A0A8U0QLG5
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Position
Sna3:19462059..19593349
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AA seq
1194 aa
AA seq
DB search
MDFMELHLGAVLLWVLVLDFCGWAEAGILYRVQEEQPPSTLIGSLASDQGLPDSGHLYKL
EVGAPYLRVDGKTGDIFTTEIPIDRETLRACRSMVRGKPCFLEFEVSVTDLIHNQSPRLI
EGRIEVQDINDNTPQFPSPVLTISVPENTHMGALFSIPLATDRDSERNRVADYALTAGPD
AATLFGLQVAEDRGEKLPQLIVLGSLDRELKDSYDLNIKAVDGGNPQRYSSALLRVVVAD
ANDNAPKFDKATYDAEVSENSPVGHSVLQVKANDSDMGPNGEIEYTLHQALDPVPKLLRI
DHSTGIIYVKGPLDREEISDLTFYVVARDKGPQPKSSKTFVTIEVTDQNDNSPAVEIRGI
GLVSHSDGVANISEDMPVGTAVALVQVSDRDEGENAVVTCVVAGDVPFQLRPASDSSTDN
KRKYFLQTTTPLDYEKVREYRVEIVAVDSGNPALSSTNSLKVQVTDVNDNSPVFSLTLFE
VNFAEENQPGDKVVDVVATDPDSGTNAELVYSIVADTSTRGLFEIDPDSGEVRAQSPLDR
EHRAHYEFRVTAADKGSPSHRGTATVVVNVLDRNDNDPKFMLSGYSFSVLENMPPLSAVG
MVTVLDIDQGENARVQLSVEPDGGRFVVQNGTGTILSSISFDREKESSFSFRLKAVDGGE
PPRSSYVGVTINVLDENDNDPVVTKPSNSSFRHLSPLGSPDSRVELVEAEDLDTGPNAEL
FFSITGGNPYELFSISSTTGEITLAKELTQKHGGLHRLVVRVSDRGKPARHTTALVHIFV
NETISNVSLVEALVGHSLYTPLETDIAGDPDYGLAAQRSNILYGSLAGVAGVVMVIVVVV
FIRHRIQREKKSGYQAGKKETKDLYTPKQGPKNGKGKKGRKGKPSKSPKPLGEEEEVSLQ
KSLKFNLDGVNNSPRIHLPLTYPPGSPDLGRHYRSNSPLPSIQLQAQSPSASQKHHVVQD
LPATNTFVGIGGDDNSTGSDQYSDYSYKASQPKYNSKQLPHRRVTFSTTNPVQDLQDASQ
HSYYDSGLEESETTSSKSSSGPRIGPLTLPEDHYERTTPDGSIGEMEHPENDMRSIPDVA
MTGNCTQECSELGHSDACWMPGQPSPVRKTRNPPKLSTFVPYQERGSLGRLANGSARLGG
EEHRASLPPSRSAYSNSGHAPRQDCPKEEVPLSVASEFLPTSPPSHTPKQEIYL
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atggacttcatggaactgcacttgggagcggttttgttgtgggtcctagtgttggatttc
tgtggttgggctgaggctggtatcctgtaccgtgtccaggaggagcagccgcccagcacg
ctgataggcagcctggcatcagaccagggcctgccagactctggtcacctttacaagcta
gaggtgggcgctccatacctgcgtgtagatgggaagacaggggacatctttaccacagaa
attcccatagacagggagacactgagagcctgccgcagcatggtcaggggcaagccctgc
ttcctggagtttgaagtgtctgtcacagacctgatccacaaccagagccccaggctcatc
gagggtcgcatcgaggtccaggacatcaacgacaacactccgcagttcccctcccccgtg
ctcaccatctctgtcccagaaaacacccacatgggggcgctgttctccatccccctggcc
acagacagggactcggagaggaacagggtggccgactacgccctaaccgcggggccagat
gcagcaactctcttcggcctgcaagtggcagaggacaggggagagaagctgccccaactc
atcgtcctgggaagtctggatcgggagctcaaggacagttacgacctgaacattaaggct
gtggacggaggtaacccccagcgctacagtagtgccttgctgagagtggtggttgcagac
gcaaacgacaatgcgccaaagtttgacaaggccacgtatgatgctgaggtgtcagaaaac
agccctgtgggacactctgtgttgcaggtgaaagccaatgactctgacatgggccccaat
ggagagatagaatatacgctacaccaggcattagatccagtgccaaaactcctgcgcatt
gatcactccactggcatcatctatgtcaaagggcctttggatcgggaagaaatcagcgat
ttgacattttacgtagtggccagagacaaaggtccccaacccaaaagttccaagaccttt
gttaccatcgaggtgactgaccagaacgacaattcccctgctgtggagatccgtgggatt
ggcctggtgagccacagtgacggtgtggccaacatatcagaggacatgcccgtgggcacg
gcggtggccttggtccaggtgtctgacagggacgagggggagaatgcagtggtcacctgt
gtggtggcaggggacgtgcctttccagctgcgcccagccagtgactcgtccactgacaac
aaaagaaaatatttcctgcagaccaccaccccactggactatgagaaggtaagggaatac
cgtgtggagattgtggctgttgattctggcaatccagcactctccagtactaactcatta
aaggtgcaggtgactgatgttaatgacaactctccagtgttttccctgaccctattcgag
gttaattttgcagaggagaaccagccaggggacaaggttgtggacgtggttgccacagac
cctgacagtggcactaatgcagagcttgtctatagcatcgtagcagacacatctactaga
ggcctgtttgagattgaccctgactcaggggaggtgagggcacaaagccctctggacaga
gaacatagagcacattatgagttcagggtcaccgcggccgataaaggctcccccagtcac
agaggaacagccacggtcgtggtcaatgtcctggaccgcaatgacaacgaccctaagttc
atgctgagtggctacagtttctctgttctggagaacatgcccccactcagcgctgttggt
atggtgacggtgctggacatagatcagggagagaacgcaagagtgcagctctctgtggag
ccagacggaggaaggtttgtggttcagaacggaacaggaaccatcctgtccagcatctcc
tttgaccgggaaaaggagagcagtttcagcttccgtctgaaggccgtggatgggggagag
cctcccaggtcctcctatgtaggcgttaccatcaatgtcctggatgaaaacgacaatgat
cctgtggtcaccaagccctccaactcatccttcagacacctgtcccctctaggttcccca
gacagccgtgtggagctagtggaagctgaagacctggacactgggcccaatgcagagctg
ttcttcagcatcactggaggaaacccttatgaactcttcagcatctcctccactactggg
gagatcaccctggccaaggagcttacccagaaacatggtgggctccatcgcctggtggtt
agggtgagtgacagaggcaagcctgcacgccacactactgccctggtgcacatcttcgtc
aatgagaccatctctaacgtcagcctggtggaggcgctggtgggacacagtctctacacg
cctctggagacagacatcgctggtgaccctgactacggcctggccgcccagcgcagtaac
atcctgtacggcagcctggctggagtggcaggcgttgtcatggtgattgtggtggtggtg
tttatccgccaccgcattcagagggagaagaagagtggctaccaggctggcaagaaggag
accaaggacctttacacccccaagcaggggcccaagaacggcaaaggcaagaagggcagg
aaaggaaagccctccaagtcccctaagcccttgggagaggaggaagaggtcagcctccag
aagagtctcaagttcaacctggatggggtcaacaacagccccaggatccacctgcccctg
acatatcccccaggtagccctgacctgggcagacactaccggtccaactctcccctgccc
tccatccagctgcaggcccagtcgccctcggcctcccagaagcatcacgtggtccaggac
ctccctgccactaacaccttcgtagggattggaggagatgacaactcaacaggttcagac
cagtactcggattatagctacaaggccagccagccaaagtacaacagcaaacagctcccc
catcgcagagtgacattctccacaaccaatccggtgcaggatctgcaggatgcatctcag
cacagttactatgacagcggcctggaggagtcagagacgaccagcagtaagtcatcgtct
ggcccccgtatcgggcccctgaccctgcctgaggatcactacgagaggaccaccccagac
ggcagcattggggaaatggagcaccctgaaaatgatatgcgttccattcctgatgtggcc
atgactggtaactgtactcaggagtgcagtgagctgggtcactcagacgcctgctggatg
cctgggcagccctccccagtgcgcaagaccaggaatccccccaaactctccaccttcgtg
ccttaccaggagagaggaagcctgggtcgcctggccaacgggagcgccaggctgggtggc
gaggagcaccgagccagccttccgccctcccgtagtgcctattccaacagcggccatgcc
cctaggcaggactgccccaaggaggaggtgcccctgagcgtggcctctgagttcctgccc
acctcccctcctagccacacccccaaacaagagatctacctgtga
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