Salvelinus namaycush (lake trout): 120043885
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Entry
120043885 CDS
T07522
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04270
Vascular smooth muscle contraction
snh04625
C-type lectin receptor signaling pathway
snh04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
120043885
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
120043885
09153 Circulatory system
04270 Vascular smooth muscle contraction
120043885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120043885
Membrane trafficking [BR:
snh04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
120043885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PH_13
PDZ
PDZ_6
SOS1_NGEF_PH
PDZ_2
Motif
Other DBs
NCBI-GeneID:
120043885
NCBI-ProteinID:
XP_038844417
UniProt:
A0A8U0QKZ6
LinkDB
All DBs
Position
Sna3:43635383..43702738
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AA seq
1481 aa
AA seq
DB search
MCTVCRVVLDVPVQQTGCVVAEGIPSESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLV
KEDGSAMRAGVQTGDRIIKFNEVEAGSYVALTVLGRPPGLAQIPLSEGEGVDPGVLSSSL
SSPHSPGTMGGTGERCSTSTSPQDHIISPLPLWEENNAVHSQNVDILQKMLSKEQQDVQA
MKEEYSRNPTAKLLKDIQEAKKHIPLLHGQLRKTTGTPQDGSLSPWNGEGGGVGAADGEQ
TPSSQVESGSNGTWTNNTVSPSPLPESPCQRETPCHCPKTTPRDSLNSCTSPDAEDTLDL
NCNFQCSVGRPLSRLNPQIIGAEDDYFDTEQEQINGQCCCFQSIELLKSRPAHLAAFLHH
VVSQFDPAPLLCYLYADLYKQTNSKETRRIFTDFYTFFMDRAANLKVAVPESIASELDRR
RPELIPEELHRQYTQLLQDTLLPDIQGNLEDFRQKRSMGLTLAEGELAKLDTERVRDRVA
LDRERSCAEHIISKIEDVLLTSQPTEEEKCTTMQYVILTYMKHLGVKVKEPRSLEPKRVR
INFLPKIKKSIKTEKEGEDKVKKPRFPSILGPPRRPSRVDSTSIGKAIEMNKQRGPQKQL
SQPILSIPDHPESSARGSQSRDPGSDVATHPSAFIPSPPHSAPASQGSDPMGRDSDSGLT
PSSALPRLSSDWLHPGDTQDRMAHPTSTHFDFSPCTLDQLQEEERESDGVQEGGTPKPAR
RMQGLGCADVPSEDDLGNEIECKQDSPNWQTLVSREVLAGLTPQEIKRQEVINELFYTER
AHLRMLKVLDNVFYQKLTRDSILPPGDIKHIFTNLEEIVQLHVSITEQVTVIRKKNETSV
IDLIGDDLLAWFSDGEEEKIKRAVGTFCSNQPFALELIKTRQKKDQRFTSFMQEAESNRL
CRRLQLKDIIPVEMQRLTKYPLLLESIAKYTEDAAEREKVKRAGECCRKILNYVNQTVKE
AENKQRLEDYQRRLDLSSLKQSENPMISEFKSLDLTKRKMVHEGPLSWKVNKDKTIELYT
LLLEDILVLLQKQDERLVLKCHSKNLAGTADTKHIFSPIIKLNTVLVRSVATDNKSFFVL
SMSDNGAQIYELMAQTVSEQRTWQCLITQRADTMKTKPHNIIPLPQTDAERDAVEVISTG
IPKLSKDPDRLSTGSIQFAEKYVTSSPGLQPTPTSINPFDSIKSDDKEEESLLLLDRREE
EEEEVEEADEEEVEAFLVGELADKLPLLQERSCQGIAIDDQEPHDAFVMPPSRAEEALRT
LAALRQVLLNHITSREKGSDKNNENRKEKEQRKGLAHGSRLLRTTSLRGPEDSNSSTLGP
RSAAASSPGSSENGTSGREEGAPGSSELPSGDTGFFETSEDYGSYIVLGGSGESSTDDDG
QASGKGGGGAQWGSDIDLKKLLSSSSQTGDAGPNLSRQVMTHIRLLQANLQHLKMRVSGD
RAPNPPPQENKIVTLTGRGSPLPVLLMPPTSPPHPSNAALT
NT seq
4446 nt
NT seq
+upstream
nt +downstream
nt
atgtgtactgtctgtcgtgttgtactagacgtgcctgtgcagcagactggctgtgtagta
gccgagggaatcccctccgagtcctgtgggcttgtccagcgttgtgtgatcattcagaaa
gatgagaacggttttgggctgacggtgagcggagacaaccctgtatttgtgcagctggtc
aaagaggatggctctgccatgcgagcaggcgtccagacgggtgataggatcatcaagttt
aatgaagttgaagcgggctcctatgtggctctcacagtgctggggaggcccccgggactg
gcccaaatccccctgtcagagggcgagggtgtagacccaggggtcctgtcgtcgtccctc
tcctcaccccactctccaggaacaatggggggaacaggggagcgctgctccacctccacc
agtccccaggaccacatcatctccccgctgcccctctgggaggagaataacgctgtacac
agccagaacgtggacatcttacagaagatgctgtccaaggagcagcaggacgtacaggct
atgaaggaggagtacagcaggaaccccacagccaaactactgaaggacatccaggaggcc
aagaaacacattcctctgctgcatggccagctcagaaagaccacaggcacacctcaggat
ggctccctctccccctggaacggtgagggggggggtgttggggcggccgatggagagcag
accccctcctcgcaggtagagagcggcagcaacggaacctggaccaataacactgtgtct
cccagtcccctccctgagagtccgtgccaaagagagaccccctgccattgcccaaagacc
accccccgagacagcctcaactcctgcacctcgcctgacgccgaggacacgctggacttg
aactgtaacttccagtgtagtgtgggcaggcccttgtcccgtctcaacccccagatcatc
ggagcagaggacgactactttgacaccgagcaggaacagatcaatggtcagtgttgttgt
ttccagagtatagagctgctcaagtctcggcccgctcacctggccgccttcctccatcac
gtggtctctcagtttgaccctgcacctctgctgtgctacctttacgccgacctgtacaag
cagaccaactccaaagagaccagacggatcttcacggatttctatactttctttatggac
cgagcagcgaatctgaaagtagctgtgcctgagtctattgcctctgaactagatcggcgg
agacctgagctgatcccagaggagctacacagacagtacacacagctgctacaggacaca
ctgctaccagacatccaggggaacctagaggacttcaggcagaagcgcagcatgggtctg
accttggcagagggggagctggctaaactggacacagagagggtgagagaccgcgtggcg
ctggatagagaacgctcctgtgccgaacatatcatctccaagatagaggacgtcttgctg
acgtcacagcccacagaagaggagaagtgcactactatgcagtatgttatcctcacatat
atgaaacacctgggagttaaagtgaaggaacctcgtagcctagagcccaaacgagtccgc
atcaacttcctgcccaagatcaagaagagcatcaaaactgagaaagagggggaggataag
gtgaagaagcctcgttttcccagcatcctcggccctcctcgtcggcccagccgtgtggac
tccacttcaatcggcaaggccatagagatgaacaagcagcggggcccccagaagcagctc
tcccagcccatcttaagcatccccgatcacccagaatcctcggcccgcggcagccaatca
agggatccaggctcggatgtggccacccacccctcggccttcatcccatcacccccacac
agtgccccagccagccagggctccgacccaatgggacgcgattctgactcgggtctcact
ccctcctccgccctgcccagactgagctctgactggctccacccaggcgacacccaggac
aggatggcccacccaaccagcacccactttgatttcagcccctgcaccctggaccaattg
caggaggaggagcgtgagagtgacggagttcaagagggaggcacacccaaaccagcccgg
aggatgcagggtttaggctgtgcagatgtgccgagtgaggacgacctggggaatgagatc
gagtgcaagcaggactctcccaactggcagacactagtcagccgagaggtcctggcgggc
ctgacaccacaggagatcaagagacaggaagtcatcaacgagctgttctacacagagcga
gcccacctgaggatgttgaaggtgctggataacgtgttctaccagaaactaacccgagac
agcatcctgcctcctggagacattaaacacatcttcactaacctagaggagattgtccag
ctacatgtgtcgataacagaacaggtgacagtcattcggaagaagaatgagacgtcagtg
atagacctgataggagacgatctactagcttggttcagtgatggggaggaggagaagatc
aagcgggcggtgggcaccttctgcagtaaccagcccttcgccctggaactcatcaagacc
cggcagaagaaagaccagcgcttcacctcctttatgcaggaggctgagagcaaccgtctg
tgtcgcagactgcagctgaaggatatcattccagtggagatgcagaggctgaccaagtat
ccactactgctggagagcatagccaagtacacagaggatgcagcggagagggaaaaggtg
aagagggccggggagtgctgcaggaagatcctcaactatgtcaaccagacggtgaaagag
gcagagaacaaacagaggttagaggactaccaaagacgcctggacctgtcctcactcaaa
cagagtgagaacccaatgatctcagagttcaagagcctggacctgaccaagaggaagatg
gtgcacgagggacctctctcctggaaggtcaacaaagacaagacaatcgagctgtacacg
ctgctcctggaggacatcctggtgctgctgcagaagcaggacgagcggttggtcctcaag
tgccacagcaagaacctggcgggcaccgccgacaccaagcacatctttagccccatcatc
aagctcaacactgtgctggtgcgctcggtggccaccgacaacaagtccttcttcgtgctg
tctatgtccgacaacggagcccagatctacgagctaatggcccagaccgtgtccgagcaa
agaacgtggcagtgtctgataacgcagagggcagacaccatgaagacaaaaccgcacaac
atcatacctttacctcagaccgatgctgagcgagacgcagtggaggtgatcagcacaggg
atacccaaactgagcaaagacccagaccgcctttccacgggaagtatccagttcgcagaa
aaatatgtcacttcctcgcctggtctgcaacccacgcccacatcaatcaacccattcgac
agcatcaaatcagacgacaaggaagaagagtcgctgctattgctagacagaagagaagag
gaggaggaggaagtggaggaggcagacgaggaggaagttgaagcgtttctggttggagag
ctggcagacaaactgcccttactccaggagaggtcatgccaaggcattgccatcgacgac
caggagccccatgacgccttcgtcatgcccccctccagagccgaggaggccctaagaacc
ttggcagccctgaggcaggtccttctcaaccacataacaagcagagagaagggcagcgac
aagaacaatgagaataggaaggagaaggagcagaggaagggcttggcccatggctcccgc
ctgctgaggaccacgtcactgaggggcccagaggacagcaacagcagtacattgggccct
aggagcgcagcagcatcctctcctggctcctcggagaacggcacctcggggagggaggag
ggggccccaggatcctcggaactcccgtctggggacacaggcttcttcgagacatctgag
gactacggcagttacattgtcctggggggctcgggggagagcagcacagacgacgacggt
caggcgagtggcaagggtggaggcggggcccagtggggctcggacatcgacctaaagaag
ctgctctcctcatcctcgcagacaggggatgctggccccaacctcagccgtcaggtcatg
acccacatccgcctgctgcaggccaacctgcagcacttgaagatgagagttagtggtgac
agagcccctaatcctccaccacaagagaacaaaatagtgacattgacagggagggggtca
cctctccctgtcctcttgatgccccccacatcaccccctcacccctccaatgctgctttg
acctaa
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