Salvelinus namaycush (lake trout): 120044311
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Entry
120044311 CDS
T07522
Name
(RefSeq) Down syndrome cell adhesion molecule homolog isoform X1
KO
K06767
Down syndrome cell adhesion molecule
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120044311
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
DSCAM family
120044311
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
fn3
Ig_2
ig
Ig_DSCAM-DSCAML_C
V-set
Pur_ac_phosph_N
C2-set_2
V-set_CD47
Ig_6
C2-set_3
Interfer-bind
fn3_2
Motif
Other DBs
NCBI-GeneID:
120044311
NCBI-ProteinID:
XP_038844853
UniProt:
A0A8U0QKN9
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All DBs
Position
Sna3:complement(28048937..28169851)
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AA seq
1897 aa
AA seq
DB search
MRGNVAVFKCIIPASVEAYITVVSWEKDTVSINIQTPRFLIASTGALYILDVQNEDGLYN
YRCMTRHRYTGETRQSNSARLFVSDPSNSAPVILDGFERREVMTSHRVELPCKASGHPAP
KYRWLKDNRPLEPDSRFRQSVTGLLIERAQPSDKGSYVCEVWNSYGNAEVVGRLQVKEPL
KAVVSPRKVKGSVGSQVSLSCSVSGSEEYDLSWYRNGEIIYPGNSVRMTGNNRENLVMAG
MAKSDGGAYQCFARKGKMSAQDFVQVILEDGTPKIISSFSEKVFGTNEFVSLFCTVKGTP
EPRVMWTLDDDPVIRDSRHRIGHYTNQEGHVISHLNISQTTGPDGGVYRCICNNSAGAVS
YQARINVRGPASIRPMKNLTAIAGRDMYIHCRVIGYPYYSIKWHKDANLLPYNHRQRAFE
NNGTLKLYDVQKDVDEGEYTCSVLVSPSLSTSQSVHVSVKVPPTIHPFEFPRFSIGQRVF
IPCVVMSGDQPVFITWQKDGRPIPASLGVTIDNIDFTSSLRISNLSLLHNGNYTCIARNQ
AATVEHQSQLIVRVPPKFVVQPKDQDGIYGKAVILNCSAEGYPVPTIVWKHSKGAGVPQF
QPIALNSGFRIQVLVNGSLLIKHVLEEDSGYYLCKVSNDVGADVSKSMYLNVKIPAMITS
YPNTTLATQGSEKRMSCTAHGEKPIMVRWEKEDRIINPESSHRYVVTVKEVADEVISTLQ
IRPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEVEIREVKDRTIALRWTMGFDG
NSPITGFDIECKNKSGSWETAQRTKDVSPQLNQATIIDLHPSSTYSIRMFAKNHIGKSEA
SNELTITTDEAAPDGPPQDVQLEAFSSQSIKVSWRAPKKHLQNGAIRGYQVGYREFSSGG
NYQFNVITMETTGDNDHSESITLDNLKKFTQYGVVVQASNSAGTGPSSQEVISTTLEDVP
SRPPENVQATAASPEVISLSWLTPPKDALNGILLGFRVIYWANLPDGELGEIRNVTTSKP
SLELDGLEKYTNYSIQVLTFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASNSVVFVS
WLPPLKLNGIIRKYTVFCSNPHPTVSSEFEAAPDIFFYRIPNLSRNRQYSIWVVAVTAAG
RGNASDIITVKPLAEAPAQILTFNGTVTTPWMRDIVLPCKAVGDPAPTVKWLKETNGSPA
PAVIDSRRIIQGNGSLVIRTVKAEDSGNYTCVASNSFGPDKIILNLQVQVPPDQPRLTVT
KTTTTSITLSWIPGDNGGSSIRGYILQYSEDNSEQWGNFAISPSERSYRLENLKCGTWYK
FTLTAQNAVGPGRISEIIEAKTHGKEPQYSKEQELFTSINATRVKLNLIGWNNGGCPITS
FTLEYRSVVSPTWTTAQRTSLIKSYILYDLAEATWYELQMKVFNSAGSAEKRVKFATLSY
DGSTIAPLVKAPTVSAGSTSSNEGLKMVTIISCVLVGIVLVFVLLLVLRRRRREQRLKRL
RDAKSLAEMLMSKNTRPADTINKQQQTMRMHIDIPRAQLLIEERDTMETVDDRSTVLLTD
NDFGETQKQKSSTVTHTVHYQSLSQATGPLVDVSDARPGTNPTARRTAKAGPAARNRYAS
QWTLNRPHPPVSAHTLSTDWRLPTPRVAGSVDKESDSYSVSPSQDTDRARSSMVSTESAS
STYEELARAYEHAKMEEQLRHAKFTITECFISDTSSEQMTAGTNDYTDSLTSSTPSESGI
CRFTASPPKPQDVSRVMNMAVPKAHRPGELVHLPPYLRMDFLLNRGMSCTGTGGRGGAGG
EGAMGQACLEPQKSRSLKRPSRMAPPTPTEAPQATSRASSRDPVPQWQPGSAATLPHREG
SELTQAAKLSTSQESLLDSRGHLKQTNNPYAKSYTLV
NT seq
5694 nt
NT seq
+upstream
nt +downstream
nt
atgagaggcaatgtggcggtgttcaagtgcattatcccagcctcggtggaggcctacatc
actgttgtgtcctgggaaaaagacacagtgtcaatcaacatccagacgcctcggttcctc
attgcctccacgggagccctgtacatcctggacgtgcaaaatgaggatggattgtataac
tacaggtgtatgacacgccaccgctacacaggagagaccaggcagagcaacagcgcacgc
ctctttgtgtcagacccctccaactcggcgccggtcatcctggatggctttgagcgtcgc
gaggtgatgacatcacaccgggtggagctaccgtgcaaggcgtctggtcacccggccccg
aagtaccgctggctgaaggacaaccgtccgctagagccggacagccgcttcaggcagagt
gtgacgggcctgctgatcgagagggcgcagcccagcgacaagggaagctacgtgtgtgaa
gtgtggaacagctatggcaacgcagaggtggtggggaggctgcaggtcaaagagcccctg
aaggcagtggtcagcccgaggaaggtgaaaggcagcgtgggtagccaggtgtctctgtcg
tgcagcgtgagtggctcggaggagtacgacctgtcctggtaccggaatggagaaattatc
taccctgggaacagtgttcgtatgaccggcaacaaccgggagaacctggtcatggctggg
atggctaagagtgatggaggagcctaccagtgcttcgctaggaaaggcaagatgtccgcc
caggactttgtccaggtcattctggaagacggcacgcccaagatcatctcttccttcagt
gagaaagtgtttggaaccaacgagtttgtgtcactgttctgcacggtgaaaggcacaccg
gagcccagggtgatgtggacgctggacgacgatccagtcatcagggactcccgccaccgc
atcggccactacaccaaccaggagggccatgtgatcagccacctgaacatcagccagaca
acagggccagacgggggggtctaccggtgcatctgcaacaattcggccggggcggtctcc
taccaggcgcgaataaacgtaagagggcctgccagcatacgaccaatgaaaaacctcacc
gccattgctgggcgggacatgtacattcactgccgcgtcattggctacccgtactactcc
atcaaatggcacaaggacgccaacctgctcccctataaccaccggcagcgggcatttgag
aacaatggcacgctaaagctgtatgatgtacagaaggatgtggatgagggagagtacacg
tgtagcgtgctggtctcaccttctctctccaccagccaaagtgtgcacgtcagtgtgaaa
gttccccccaccatccatcccttcgagttccctcgtttctctattggccaacgtgtgttc
attccgtgcgtggtgatgtcaggtgatcagcctgtcttcatcacctggcagaaggacggt
cggccaatcccggccagcctcggcgtaactatcgacaacatagacttcaccagctcccta
cgtatctccaacctgtctctcctgcacaatggcaactacacctgcatcgcacgcaaccag
gccgccaccgtggaacaccagagtcagctcatcgtcagggtccctccaaagtttgtggtg
cagcccaaggaccaggacggcatctatggaaaagctgtgatcctcaactgctctgcagag
ggataccctgtccctaccatagtgtggaagcactccaaaggtgcgggggttccccagttc
cagcctatagccttgaactcgggcttccgtatccaggtgctggtcaacggctctctgctc
atcaaacatgtactggaggaggacagcggctactacctgtgtaaggtcagcaatgacgtg
ggagctgacgtcagcaagtccatgtacctcaacgtcaaaatcccagccatgatcacgtcg
tatcccaacaccacgctggccacgcagggcagtgagaagaggatgagctgcacggcccac
ggggagaaacccatcatggtgcgttgggagaaggaagatcgcatcatcaacccagagagc
agccaccgctacgtggtcaccgtcaaagaagtggccgacgaggtcatctccaccctgcag
atcaggcctacagtgagggaagactcaggcttcttctcctgccatgccatcaactcctat
ggtgaagaccgagggatcattcagctaacagtgcaagagcccccggaccctcctgaggtg
gagatcagagaggtgaaagacaggaccatcgccctccgctggaccatgggctttgacgga
aacagcccaatcacaggcttcgacattgagtgcaagaacaaatcaggctcctgggaaaca
gcccaaaggaccaaagacgtgtctccccagctcaaccaggccaccatcatagacctgcac
ccctcctccacctacagcatccgcatgttcgccaagaaccacatcggcaagagtgaggcc
agcaacgaactcaccatcacaacagacgaagcagcccctgatggtcccccacaagatgtg
cagcttgaagctttctcctctcagagcatcaaagtgtcctggagggctcctaagaagcac
ctccagaatggagcaatccgaggctaccaggtgggctacagggagttcagctccggggga
aactaccagttcaatgtcatcaccatggagacgacgggggacaacgaccacagtgagagc
atcaccctggacaacctgaagaagttcacccagtatggggtggtggtgcaggccagcaac
agtgctgggactggaccttcctcccaggaggtcatctctaccacactggaggatgttccc
agtcgacctccagagaacgtccaggccacggcggcatccccagaggttatctctctgtcc
tggctgacccctcctaaagatgccctcaacggcatcctgcttggcttcagagtcatctac
tgggccaacctgccggacggagagctgggggagatccgtaacgtgaccacctctaagcca
tctctggagctggatggtctggagaagtacactaactacagcatccaggtgctgaccttc
acccgggcaggagatggggtgcgcagcgagcagatcttcacccgcaccaaggaggacgtc
cctggtcctccggctggcgtgaaggcagcggcggcgtctaactcagtggtgtttgtgtcg
tggctccctcctctcaaactcaacggcatcatcaggaaatacactgtcttctgctctaac
ccacaccccacggtgagcagtgagtttgaagcagctccagacatcttcttctaccgtatc
cccaacctgagcaggaaccgtcagtacagcatctgggtggtggccgtcaccgcagccggc
cgcggaaacgccagcgacatcatcaccgtcaagcccctggccgaggctcctgctcagatt
ctgacgttcaacggcaccgtgaccacaccctggatgagggacatcgtgttgccctgtaag
gcggtgggcgacccagcccccacggtcaagtggctcaaggagaccaatggaagccccgcc
cctgctgtgatcgacagtagacgcatcatccagggcaatggcagcctagtcatccgcaca
gtgaaagctgaggattctgggaactacacctgtgtggctagcaacagttttgggccggat
aaaatcatcctcaacctgcaggttcaagttcccccagaccagcctcgtcttaccgttacc
aagacgaccaccacatctatcactctgtcctggataccaggagacaacggaggcagctcc
atcagaggctacatcctgcaatactcagaggacaacagtgagcagtggggcaactttgcc
atcagccctagtgagcgttcctatcgcctggagaacctgaagtgtggcacctggtacaaa
tttacactgacggcacagaatgctgtggggccagggcgaatcagtgagatcatcgaagct
aagactcatgggaaagaaccccagtactctaaagaacaggagctcttcaccagtatcaat
gccacgcgtgtcaagctcaacctgattggctggaacaacggcggctgtccaatcacatcc
ttcacgttggagtaccgttcggtggtgtctcccacgtggaccacggcccagcgcacctct
ttgatcaagagctacatcctgtatgacctggccgaggccacctggtacgaactgcagatg
aaggtgttcaacagcgccggctcagcagagaagagggtcaagttcgccacactcagctac
gacggcagtaccatcgctcccctggtgaaggccccgacggtgagtgcgggcagtacgtcc
agtaacgagggtctgaaaatggtgaccatcatctcgtgtgttctggtgggcatcgtgctg
gtcttcgtcctgctacttgtgctcaggaggcggaggcgggaacagagactgaagaggctt
cgagatgctaaaagtttagccgagatgctgatgagtaaaaacacacgacctgcagacacc
atcaacaagcagcagcagaccatgagaatgcacatcgacatcccccgagcccagctgctc
atagaggagagagacaccatggagacagtcgatgacaggtccacagtgctactgactgac
aatgactttggggagacccagaaacagaagtcgtctacggttacccacactgtccactac
cagtccctgtcacaggccactggacctctagtggatgtatctgacgctaggccaggaacc
aaccccacagcccgccgcacagccaaagcaggccctgccgcacgcaaccgctacgctagc
cagtggaccctgaaccgaccacacccgccagtctcggcccacaccctaagcactgactgg
aggctgcccacgccacgggtggccggatctgtggataaggagagtgacagctacagtgtc
agcccatctcaggacacagaccgagcacggagcagcatggtgtctacagagagcgcgtca
tccacctatgaggagctggcgcgggcctacgagcacgccaaaatggaggagcagctgcgc
cacgccaagttcaccatcacagaatgcttcatctcggacacgtcatcggagcagatgacg
gcaggcaccaacgactacacagacagcctgacatccagcacgccctccgagtcaggcatc
tgcaggttcaccgcctccccgcccaagcctcaggacgtcagccgagtcatgaacatggcc
gtgcccaaggctcacagaccgggtgagcttgtgcacctgcctccttacctgcgcatggac
ttcctgctgaaccgtggcatgtcatgcacgggcactggagggaggggtggtgccgggggg
gagggggccatgggtcaggcctgtctggaaccccagaagagtcgctccctgaagcggcca
tcgcgtatggcgccccctacacccacagaggccccccaggccaccagcagggccagcagc
agggacccagtgccccaatggcagcccggctcagccgccaccctgccccacagagagggc
tcagagctgacccaggccgccaagctcagcacctcccaggagtccctactggactcacga
ggacacctcaaacagaccaacaacccctacgcaaagtcctatacgctggtataa
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