Salvelinus namaycush (lake trout): 120044840
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Entry
120044840 CDS
T07522
Symbol
abca3b
Name
(RefSeq) ATP-binding cassette sub-family A member 3
KO
K05643
ATP-binding cassette, subfamily A (ABC1), member 3
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
120044840 (abca3b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
snh02000
]
120044840 (abca3b)
Transporters [BR:
snh02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
120044840 (abca3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
AAA_15
AAA_22
RsgA_GTPase
AAA_29
Foamy_BEL
SRP54
Motif
Other DBs
NCBI-GeneID:
120044840
NCBI-ProteinID:
XP_038845454
UniProt:
A0A8U0U9K8
LinkDB
All DBs
Position
Sna3:1432972..1522564
Genome browser
AA seq
1706 aa
AA seq
DB search
MAIARQFGLLLWKNYLQQKRQILVTLVEIALPLLFSGILIVLRENVPFKDYPNATLYQSF
SVDGLQYPLDNYHHYQLAYVPGNASVVRRVAEDVQRSLDPVISSVHGFETEEQFEDFVRK
DPQSRKVLAAVVFEHSFTHDDEPLPQQVSYHLRFSFSPRNAPAKEKSELNINNDFDWHTL
NLFPLFQLPGPREQYDLQGGTPGYFREGFLAVQHAVNQAIMRSYNSTGAAWLLSHTRVVL
RRFPFPPFIYDVFILAIQNQLPLLLVLSLTYTSLNIVRAVVQEKERKLKEYMRMMGLSNW
LHWTAWFLMFFLFLAISMFFVTLLFCIKVSPNGAVLTYSDPTLVFVFLLVFAVATINFSF
MISAFFSRANVAAAAGGFIYFLSYLPYVFLWPRYDLLSHAQKVSACLISNVAMAMGAQLL
GMFEGKGTGIQWCNLFESVTVDDDFSLAQVLGLLLLDALLYGLVAWYVEAVFPGEYGVPL
PCYFFLLPSYWCSSPRMAMVKEEEDVEKALKGEFIEEEPAGLVSGVKIKHLNKEFKVGNK
TRQAVKDLTVNMFEGQITVLLGHNGAGKTTTLSMLTGLFPPSSGRAYINGYDICQDMALI
RHSLGLCPQHDVLFDNLTVREHLLFYTQLKGYSQEKIPAEVDRIIRILNLEDKRHSHSKT
LSGGMKRKLSIGIGLIGDSKVVMLDEPTSGMDPSARRATWDLLQGEKRGRTILLTTHFMD
EADLLGDRIIIMAGGELQCCGSPLFLKNKYGAGYHMVIVKDALCNVSEITRLVHMYVPNA
TLESSAGAELSYILPKESTNRFELLFAELEMNREELGIASYGASVTTMEEVFLRVGKLVD
SSLDIQAIQLPALQYQHERRSHDWTMDDTSSYSGMTDVTDFTDSGTLISEDCSNIKLNTG
ARLYMQQFYAMFLKRALYSWRNWKVIVAQFLVPLVFTVLALVVAKTFPGRYDSPQLRLAL
GRYGPTTVPVALEPGKGPLAIALAQVYSSQLAAQKAQDVNISDFTEYVLTKTEEEGGAFN
ERCVVGASFSGGTGKIAEVTAYFNNQGYHTAATALMMVDNTLFKMLAGPNASIMTGNMPM
PRNISESAQSQLTEGQTGFAIAINLMYGMASLSSTFALLLVTERSLKSKHVQQVSGVYLS
NFWFSALLWDLVNFFLPCMLMLVVFRAFGVKAFIADNHLVDVLLILLLYGWAVIPLMYLL
SFLFSTAATAYTRLTIFNIISGTATFLTVTIMTIPELNLQDLSCNLDKVFLLFPNYCLGM
SFSQFYQNYQFITFCTSNPMTTAFCRVWNITYQENYFSMSEPGVGRFLVALSLQGVVFIT
LLFIIEMQCVKTLRRFLTHLASRRKQLPLMGDAALLPEDRDVAEERKRVLECQPIVESMV
GSPLILQDLSKVYSSGETVLAVDRLSLAVGKGECFGLLGFNGAGKTTTFKMLTGDETVTS
GDAYIDGYSILRDVKKVQQRIGYCPQFDAVLDHMTGRETLSMYARLRGIPEKYVSGCVEN
VLRSLLLEPHADKLCRTYSGGNKRKLSAAVALIGGPPVIFLDEPSTGMDPVARRLLWDAV
TRTRDSGKAIIITSHSMEECEALCTRLAVMVNGQFKCLGSPQHLKSKFGSGYTLLAKVRV
DKEVEDSDLQLFKDFIESTFPGSLLTDEHQGMVHYHLTDKTLTWAQVFGTLEAAKEKYNI
DDYAVSQISLEQVFLSFAQFQHCSRK
NT seq
5121 nt
NT seq
+upstream
nt +downstream
nt
atggcgatagcacgccagtttggattactattgtggaagaactaccttcagcagaagcgt
cagatcctggtgactctcgtggagatcgccctgcccctgctcttctcgggcatcctcatc
gtgctgcgcgagaacgtgcccttcaaggactaccccaacgccacgctctaccagagcttc
tctgtggatggcctgcagtacccactggacaactaccatcactaccagttggcctacgtg
ccaggcaacgccagtgtggtgcggcgggtggcggaggacgtgcagcgcagcctggacccc
gtcatcagttcagtgcatgggtttgagacagaggagcagtttgaggactttgtgaggaag
gaccctcagtctcggaaggttctggctgctgtggtgtttgagcactccttcactcacgat
gacgagccactgccccaacaggtcagctaccacctgcggttcagctttagtccccgtaat
gccccggccaaggagaagtctgagctaaacatcaacaatgactttgactggcacaccctc
aacttgttccccctcttccaactgcccgggcccagggagcagtacgacctccaggggggc
acgcctggttacttccgcgagggcttcctggcagtgcagcatgcggtcaaccaggccatc
atgcgttcctataacagcacaggagcagcctggctcctctcccacacccgggtggtcctc
cgccgattccccttcccgccgttcatctacgacgtgttcatcctggccatccagaaccag
ctgcccctcctcctggtgctcagcctcacctatacctccctgaacattgtgagggccgtg
gtgcaggagaaggagaggaagctcaaggagtacatgcggatgatgggcctcagtaactgg
ctgcactggacggcctggttcctcatgttcttcctcttcctcgccatttccatgttcttc
gtcacgctgctcttctgcatcaaggtgagccctaatggagctgtgttgacctatagtgac
cccaccctggtctttgtcttcctgcttgtcttcgccgtggcaaccatcaacttcagcttc
atgatcagtgccttcttctcaagagccaatgtggcggcggcggcgggcggcttcatctac
ttcctgtcctacctgccgtacgtgtttctatggcctcgctacgacctgctgagccacgcc
cagaaggtgtctgcctgcctcatctccaatgtggccatggccatgggagcgcagctactg
ggcatgtttgagggaaaaggcacggggatccagtggtgtaacctgtttgagtcggtgacg
gtggacgatgacttctccctggcccaggtgctggggctgctgctgctggatgccctgctc
tatggcctggtggcctggtacgtggaggctgtgttcccaggggagtacggagtccccctg
ccctgctacttcttcctactgccgtcctactggtgcagcagcccccgcatggccatggtg
aaggaagaggaagacgtggagaaggctctgaagggagagttcatcgaggaggagccagct
ggactggtctcaggagtcaagatcaaacacctgaacaaggagttcaaagtgggtaacaag
acgcggcaggctgtcaaggatctgacggtgaacatgttcgagggccagatcacagttctg
ctggggcacaacggagccgggaagaccaccacactgtccatgctgacaggtctgtttcct
cccagcagtggcagggcctacattaacggctatgacatctgtcaggacatggctctcatt
cgccacagcctgggcctgtgtccgcagcacgacgtgctctttgacaacctcactgttcgg
gagcacctgctattctacacacagctgaaggggtattcccaggagaagattccagctgag
gtggaccggatcatcaggatcctgaacctggaggacaagcggcattcccactccaagact
ctgtcaggtgggatgaaaaggaaactatccatcggcatcggcctcatcggagactccaag
gtggtgatgctggatgagcccacgtcgggcatggacccgtcggcgcggcgggccacctgg
gacctgcttcagggcgagaagcgcgggcgcaccatcctgctgactacgcacttcatggac
gaggccgacctgctgggggaccgtattatcatcatggctgggggagagctgcagtgctgc
ggctcgccgctgtttctcaagaacaaatatggtgctggctaccacatggtgatcgtgaag
gacgcgctgtgcaacgtgtctgagatcacacgtctggtccacatgtacgttcccaatgcc
acgctggagagcagtgctggggctgagctctcatacattctccccaaagagagcaccaac
cggtttgagctgctgtttgcagagctggagatgaacagagaggagctgggcatcgccagc
tatggagcctctgtcaccaccatggaggaggtcttcctcagagtggggaagctggtggat
tctagcctggacatccaggccatccagctgccggcgctgcagtaccaacacgagagacgc
tcccacgactggaccatggatgacaccagcagctacagcggcatgacggacgtcaccgac
ttcactgacagcggcacgctcatctccgaggactgctccaacatcaagctcaacaccggg
gccagactgtacatgcagcagttctatgccatgttcctgaagcgggcactctatagctgg
aggaactggaaggtgattgtggcccagttcctggtgcccctggttttcactgtgctggcc
ttggtggtggcaaagaccttccccgggcgctacgactcaccgcagctgaggctggcactg
ggccgctatggccccaccactgtgcccgtggccctggagcccggcaagggaccgctggca
atcgccctggcacaggtgtattcctcgcaattggccgcccagaaagcccaggatgtcaat
attagcgacttcacggagtacgtgctcaccaagaccgaggaggagggcggggcattcaac
gagcgctgcgtggtgggtgcatcgttcagcggcggcacggggaagatcgccgaggtcacg
gcctacttcaataaccagggctaccacacagccgctacagccctgatgatggtggacaac
accctgttcaaaatgctggccgggcccaacgcatcgattatgacgggaaacatgcccatg
ccccgcaacatctccgagagcgcccagagtcagctgacagaaggtcagacgggcttcgcc
atcgccatcaacctgatgtatggcatggcatccctgtccagtaccttcgccctgctcctg
gtcacagagcgttcactcaagtccaagcacgtacagcaggtcagcggcgtctacctctcc
aacttctggttctctgcactgctctgggacctggtcaacttcttcctgccctgcatgctc
atgctggtggtgttccgggcgtttggggtcaaggccttcatagcggacaaccacctggtt
gatgtgttattaatcctgctgctatatggctgggccgtcatccccctcatgtacttgctc
agcttcctgttctccaccgctgccaccgcctacacccgcctcaccatcttcaacatcatc
agcggcaccgccaccttcctcaccgtcaccatcatgaccatcccagagctaaatctacag
gacctgtcttgtaacctggacaaggtgtttctgctcttccctaactactgcctgggcatg
tccttcagccagttctaccagaactaccagttcatcaccttctgcacctccaaccccatg
accacggccttctgccgtgtctggaacatcacgtaccaggagaactacttctccatgtcg
gagccgggggtggggcgtttcctggtggccctgtccctgcagggtgtagtcttcatcacc
ctcctattcatcatcgagatgcagtgtgtcaaaaccctccgccgtttcctcacccacctc
gccagcagacgtaaacagctgcctctgatgggggatgcggccctactgccggaggacagg
gatgtagcggaggagaggaagagggttctggagtgtcagcccatagtagagtctatggtg
gggagcccactcatactgcaggacctcagcaaggtatacagcagtggagaaacagtactg
gcggtagacagactctctctagcagtggggaaaggagagtgttttggcctgctgggtttc
aatggagcagggaagaccaccaccttcaagatgctcaccggggacgagactgtcacctct
ggcgatgcctacattgacggctacagcattctgagggatgtcaagaaggtacagcagcgg
attggctattgcccgcagttcgacgctgtcctggatcacatgacaggaagagaaacgctg
agcatgtacgctcggctccgggggataccagagaagtacgtgtcgggctgcgtggagaac
gtgctacggtccttactactggagccccatgctgacaaactatgtcgcacctacagcggg
ggcaataagaggaagctgagtgcggctgtggctctgattggtggacccccggtcatcttc
ctggacgagccgtccactggcatggacccggttgctaggcgactgctgtgggatgctgtg
acgcgcacccgggattctggaaaggccatcatcatcacttctcacagtatggaggaatgt
gaggccctgtgtacccggctggctgtgatggtgaacggtcagtttaagtgtctgggcagc
ccccagcatctgaagagtaagtttggcagcggctacacactactggctaaagtacgagtg
gacaaggaggtggaggatagcgacctgcaactcttcaaggacttcatcgagagcaccttc
ccaggaagtctactaacagatgaacaccagggcatggtgcactaccacttaactgacaag
actctcacctgggcacaggtgtttggcaccctggaggcagccaaagagaagtacaacatc
gacgactacgctgtgagccagatctccctggaacaggtgttcctcagcttcgcccagttc
cagcactgcagcaggaaatag
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