Salvelinus namaycush (lake trout): 120044861
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Entry
120044861 CDS
T07522
Symbol
taf1c
Name
(RefSeq) TATA box-binding protein-associated factor RNA polymerase I subunit C isoform X1
KO
K15214
TATA box-binding protein-associated factor RNA polymerase I subunit C
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
snh03021
]
120044861 (taf1c)
Transcription machinery [BR:
snh03021
]
Eukaryotic type
RNA polymerase I system
Basal transcription factors
SL1/TIF-1B
120044861 (taf1c)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF1C_beta-prop
TAF1C_HB
TAF1C_C
Motif
Other DBs
NCBI-GeneID:
120044861
NCBI-ProteinID:
XP_038845481
UniProt:
A0A8U0QMV6
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Position
Sna3:complement(3407758..3417510)
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AA seq
1273 aa
AA seq
DB search
MDYNFPQKLFPVYFNSGPPSSTFRHNVGGWGSYGQVLEVNVALHENDVSLPKVDWKFESQ
HQVKGETWVPVEPIAIPLLRPKRGHKWSSTALSDPLDFSEQMQNFYQYKYTDAFCTMSHI
LGDNFHFRQGRRKVTVLGDNFHFRQGRRKVTVLGDNFHFRQGRRKVTVLGDNFHFRQGRR
KVTVLGDNFHFRQGRRKVTVLGDNFHFRQGRRKVTVLGDNFHFRQGRRKVTVLGDNFHFR
QGRRKVTVLGDNFHFRQGRRKVTVLGDNFHFRQGRRKVTVLGDNFHFRQGRRKVTVLGDN
FHFRQGRRKASERNAVHMWQMKHFMHTLKYKKCELTHLERQAKRYHNLLSDVIHDIPPAL
LADHLHEELTYQSGQEQFSDHATGGAIGYISFTNTSISQQGCLVYPGKAGLNKLNFHRVV
LEFQEGKPPCFDVSHKPLSFQLNGTIRQITIGLPQDECHVGVRCDYLCGVWKVSEKNIPK
TLEVIQTKQPATCLSASPHVLGELLVTSESGAAYLWTVGKGLQKFRQEYSNLYFNSKSSW
RWCDFSGHPRVMVYADRTGVELTDIRTKDHCSHTLFRIGQTPDCKSGERVILSNYLRDVH
TFHHLVTTQHSAYVMDERFPCLPMIQWDHMMEHPPMFAQVVAGLPSGGGTTKVLLGSQRS
QEVILLQYSGGREEACVTRGPPRALLSPRDSLGHLPVQLPHRQHHAQDRLANPAAGLTVI
HQSQAKEDCICVLQLTEAGDIFYHTLKSQTETFSKDDPPAPTQNSVGPEGRSGDVQSTLG
TSRSSALGETWYSSGPQSPADDSGFEGRRQPWDTPRAGLEMVINDPHDDLYLTLATNTGL
TDTQETAATAPLPTVQSLDTNVNINPVRPKAKVSDEALLVWRKWILKLLKCPRKRRNLPH
KTTKTEYLLPDDSLQKDPLEDHCRRTLRKDLRETMRNGHVLVHRNTCLKPLALVPVPAPV
EPSEWADVLSERMSASWEPGLGGWRSWWEERLGLNREEKVEALRRKRRRQKQAKAHSRID
LSGSFTSSISYQSDLDSASLSGWSSAASQYASSDVDSAAKSCYNTKWATLSEPGTPRATT
PTPQTSNSQPTTPHRVFGSKPTTPLKQLSSFLSQPTIPYSQSSSSSLPTIPYSQSSSSSL
PTIPYSQSSSSSLPTIPYSQFTSSEPLFTPQKQPTVGKLLPWTTVGSDSSAAGILRTVVA
TQKPKPQNQDYLNSLFASQEPMDASQGVGFNESRHHTPLATSSQLSSISTSQRNLKVGLT
SSEPKRKKSRMGF
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggattacaatttcccacagaaacttttcccggtttatttcaactctgggcccccaagt
tctacgtttagacataacgtcggaggttggggttcgtatggtcaagtgttggaagtcaac
gtcgctctacacgagaacgacgttagtctaccaaaagtagattggaagttcgaatctcaa
caccaagtgaagggagagacttgggtgccagtggaaccgatagcaataccacttctgcga
ccaaaaagaggccacaaatggtcatcaacagcactgtcagatcctttggacttttcagag
caaatgcagaacttctaccagtacaagtacacggatgcgttttgcacaatgagccacatc
ctgggggataacttccactttagacaggggaggagaaaggtgactgtcctgggggataac
ttccactttagacaggggaggagaaaggtgactgtcctgggggataacttccactttaga
caggggaggagaaaggtgactgtcctgggggataacttccactttagacaggggaggaga
aaggtgactgtcctgggggataacttccactttagacaggggaggagaaaggtgactgtc
ctgggggataacttccactttagacaggggaggagaaaggtgactgtcctgggggataac
ttccactttagacaggggaggagaaaggtgactgtcctgggggataacttccactttaga
caggggaggagaaaggtgactgtcctgggggataacttccactttagacaggggaggaga
aaggtgactgtcctgggggataacttccactttagacaggggaggagaaaggtgactgtc
ctgggggataacttccactttagacaggggaggagaaaggtgactgtcctgggggataac
ttccactttagacaggggaggagaaaggcaagtgaaagaaatgctgttcacatgtggcag
atgaagcacttcatgcacacacttaaatacaaaaagtgcgagttaactcatttggagcgg
caggccaaaaggtaccacaacctgttatcagatgtgatccatgacatccctccagccctg
ctagctgatcatctccatgaggagctgacctatcagagcgggcaggagcagttctctgac
cacgccacagggggtgccatagggtacatttcctttaccaacaccagtatctctcagcaa
ggctgtctggtgtaccctgggaaagctggccttaacaagcttaacttccacagggtggtg
ctagagtttcaagaagggaagcctccatgttttgatgtgagccacaagcctctctcattc
cagctcaatggtacaatcagacagatcaccattggccttccgcaggatgaatgtcacgtg
ggggtgcgctgtgactacctgtgtggtgtctggaaggtcagtgagaagaacatccctaag
actctggaggtcattcagaccaagcagcctgctacatgtctcagtgccagtccccatgtc
cttggagagcttctggtgaccagtgagagtggagctgcctatctatggacggtggggaaa
ggtttgcagaagttccgtcaggagtacagtaacctgtacttcaattctaagtcgtcatgg
agatggtgtgacttctctggccaccccagggtgatggtgtatgctgaccggacaggtgtg
gagctcactgatatcaggaccaaagatcattgcagccacacgctgtttcgtatcggccaa
actcctgactgtaagagtggcgagagagtcatcctgtccaattacctgagagatgtccac
accttccaccacctcgtcaccacacagcactctgcctacgtcatggatgagcgtttcccc
tgcctccccatgatccagtgggatcacatgatggagcatcctcccatgtttgcccaggtc
gtggcggggttaccgtcggggggagggactactaaggtgctgctgggctctcagagatca
caggaagtgatcctgctacagtactcaggtggtagggaggaggcctgtgtcaccaggggc
ccacctcgggccttgctcagccccagagacagccttggacacctgcctgtccaactcccc
cacagacagcaccatgcccaggacagactagccaatcctgctgctggtcttactgtcatc
catcagagtcaagccaaggaggactgtatctgtgtgctgcaactcactgaggccggagac
atcttttaccacacgctaaagtcccagactgagaccttcagtaaagacgacccaccggca
ccaacccagaactccgtgggacccgagggacgtagcggagatgtacagagtacgttagga
acctcaagaagtagtgccctaggtgaaacatggtattcctctggaccccagtctcctgcg
gatgactctgggttcgagggaaggagacagccgtgggacactcctagggctggactggag
atggttatcaacgaccctcatgacgacctgtacctgacgctagcaacaaacacaggatta
actgatactcaggaaaccgctgctactgctcctctacctacagtccagtctttggacact
aatgttaacattaaccccgtcaggccaaaggccaaagtcagtgatgaggctctgttggtt
tggaggaagtggatcctcaaactgttaaagtgcccccggaagcgccgcaatctcccacac
aagaccacaaaaaccgagtatcttctacccgacgacagccttcagaaagacccgttggaa
gatcactgtcgtcggaccctgaggaaggacctgagggagaccatgaggaatggacatgtc
ctcgtccacaggaacacctgtctcaaacccctggctctggtccctgtcccggcacccgtg
gagccctctgagtgggctgatgtgctgagcgagaggatgagcgcatcgtgggagcctggg
ctggggggatggaggagctggtgggaggagaggctggggctgaaccgagaggagaaggtg
gaggctctgcggaggaagaggaggagacagaaacaggcaaaggctcacagtcgtatcgac
ctatcaggcagcttcacctcgtccatcagctaccaatcagacctggacagcgcctctctc
tccggttggtcctcggcagccagtcagtacgccagctccgacgtagacagtgcggccaaa
agctgctacaacaccaagtgggccaccctgtctgagccgggtacaccgagggctaccaca
ccaacaccacagaccagtaactcacagcccacaacacctcatagggtgtttggttcaaaa
ccaactacaccactgaagcagcttagtagtttcctctcccagcccactatcccctattca
cagagcagtagcagttcactgcccactatcccctattcacagagcagtagtagttcactg
cccactatcccctattcacagagcagtagtagttcactgcccactatcccctattcacag
ttcactagttccgagccactgtttacaccccaaaaacagcccaccgttggtaagttgttg
ccctggacaacagtaggttctgactccagcgcggcgggcattttgagaacggtggtggca
acccagaagccaaagccacagaatcaggattatttaaattctctctttgcatcccaggag
cctatggatgcctcacagggagtagggtttaatgagagcagacatcatactcctttggcc
acctcttctcagctgtcctccatctctacttcacagaggaacctgaaagtgggactgacc
tcctcagaacccaaaaggaagaagtctcgtatgggattctga
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