Salvelinus namaycush (lake trout): 120044890
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Entry
120044890 CDS
T07522
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1-like
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120044890
Membrane trafficking [BR:
snh04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
120044890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
ANAPC4_WD40
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
120044890
NCBI-ProteinID:
XP_038845540
UniProt:
A0A8U0UAJ1
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All DBs
Position
Sna3:complement(7415605..7514504)
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AA seq
1429 aa
AA seq
DB search
MYFLTGWPRRLLCPLKSEEEPFHVQPSSQRFYFAVLSETQLSVWFSRPSVLIVSYIESAK
ASSQFGCYQQAEWKQDDSMIAVAAANGYILLFDVVGGGEDKYLYEPVYSKGSSGVKVTPG
YKEEQCAPALSLEMKRPIDLEAPITSMQSLQEDLLVSTADGYLHILHWDGVSNGRKAISL
CSVPFSLDLQSARGGLCLDLKGVYIRDMTYCVTLDGFAVVLDDGRLGFITPLANRITADQ
LQGVWAADVTDGTCVAVNNKYRLVTFGCASGSVLVYSIDTTTGSMQLSHKLELTPKHYPD
VWNKTGAVKLIRWSPDYSVAMVTWECGGLSLWSVFGAHLICTLGEDFAYRSDGTKKKPIN
ISSMCWGAEGYQLWVITSREETELVENMEEAPPQTQQAGILQFHFIKSALTVNPCTSNQE
QVLLHGEDRLYLSCGDPTQLPSSSSESPHPHNLPHGGEGSPPHHPSPNSTSQGLSTLLGY
KHWHVVQIHSTYLESNWPIRFAAIDTAGQCIAVAGRRGFAHYSMSTRKWKLFGNITQEQN
MTVTGGLVWWNGFVVVACYNFIDRQEELRLYLRSSNLDNTFSSVTKLHSGTLLLNVFRDM
IILFRADCSICLYSMERRHDGPNPSASVELLQEVSMSRYIPHPALVVSVTLTSVRTETGI
TLKAPQQACMADSIILNLAGQLIMLQRDRSGPQIQEKLPFCPPVVLAQYVENVWTTCRSN
RKKRHLLEALWLSCGEAGMKVWLPLFPRDHRKPHSFLSRRIMLPFHINIYPLAVLFEDAL
VLGASNETVLYDSLQGPREGRESLEGLFPYCTVERTSQIYLHHILRQLLVRNLGEQALLL
AQSCAELPYFPHVMELMVHVVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTIVHCARK
TEFALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTAL
EQGKWDLCRHMIRFLKAIGSGEMETPPPTPTIQEPSSTGGFELFRNRSISLSQSADSIAA
GKFNLQKTFSMPSGPSVKGSDRWPKDSDCAENMYIDMMLRRHARHLLEHVRLKELGCFSA
QLGFELIGWLCHERTRVARVDDFVMALKCLHKDFLWPFPVIPAGSISSPFKNGHRRTVLS
QHLLKSQSADSLLNSDMDTAPPQAAARNSNHTWLDGLGALGPTEPTEMDTALSHGGPQTQ
EAFLSPLTNKTEECSIGSATDLTETSSMVDGDWTMVDENFSTLSLTHSELEHISMELANK
GPHKSQVQLRYLLHVFMEAGCLEWCVVIGLILREAAVIKQVVNFLDSPEVPPETVQSVRS
GLLGVDAWASTDCLGYKPFLNMIRPQLQKLIETSVEQIQPEAFLPGASNSKLAEPQPGGP
SAEDSRGPALLGLALPLEPPGGLGTEDGRVPEEQEEQAVDEGVYDCTLS
NT seq
4290 nt
NT seq
+upstream
nt +downstream
nt
atgtattttttaactggctggcctcggaggctactttgtccactgaaaagtgaagaagaa
ccgtttcatgttcaacccagctcccagaggttttacttcgctgtattgtccgagactcaa
ctaagcgtctggtttagtcggcccagtgttctgatagtgagctacatagagtcggcgaaa
gcatcatcccagtttggctgctatcagcaggccgaatggaagcaggacgattccatgata
gcagtagcggctgccaatggttacatcctcctgtttgacgtggtgggaggaggagaggac
aagtatctttatgaacccgtctattccaaagggagtagtggtgttaaggtcaccccaggt
tataaagaggagcagtgtgcccccgctctcagcctggagatgaagagacccatagatctg
gaggctcccatcaccagcatgcagtctcttcaggaggatctgttggtgtctactgctgat
ggctacctccacatcctccactgggatggagtcagcaacggcaggaaggccatcagtctc
tgtagcgtccctttctccctggacctacagtctgccagaggtggtctgtgtctggacctg
aagggggtgtacatcagagacatgacttactgtgtgactctggatggctttgctgtggtg
ctggatgatggcaggctggggttcatcactcctctagccaacaggatcactgcagaccag
ctgcagggcgtctgggcagcagatgtaacagacggcacgtgtgtggctgtcaacaataag
tacagactggtgacctttggctgtgccagtggctcagtgttggtgtacagtatcgacacc
actacagggtccatgcagctctcccacaagctggagctcactcctaaacactaccctgac
gtgtggaacaagacgggtgcggtgaagctgatccgctggtcccctgactacagtgttgcc
atggtgacctgggagtgcgggggactgtctctgtggagtgtgttcggagcccacctcatc
tgtaccctgggggaggactttgcgtatcggtcagacggcactaaaaagaaacctataaat
atcagctcaatgtgctggggagcggagggctaccagctgtgggtcatcaccagcagagag
gagacggagctagtagagaacatggaggaggctcctccccagacccagcaggctggcata
ctgcagttccacttcatcaagagcgccctcacggtcaacccttgcacgagtaaccaggag
caggtgttacttcacggggaggaccgtctctacctaagctgtggtgaccccacccagctc
ccctctagcagctcagagagcccccacccccataacctcccccacggcggagagggcagc
cccccccaccacccatcgcccaactctacctctcagggactcagcactttactgggatac
aagcactggcacgtggtccagattcacagtacatacctagagagcaactggcctatacgg
tttgcagccatagacacagcaggccagtgtatagctgtagcagggagacgtggatttgca
cattactccatgtccaccaggaaatggaagctgtttgggaacatcactcaggagcagaac
atgaccgtgacaggggggctggtctggtggaacggctttgttgttgttgcctgttacaat
ttcatcgaccggcaagaagagctgcgtctgtacctgcggtcatctaacctggataacacc
ttctcctccgtcaccaagctgcactctggcactctgctgctcaacgtgttcagagacatg
atcatcctcttcagagcagactgctccatctgcctctacagcatggagaggagacacgac
gggcccaatccatcagccagtgttgagctgcttcaggaggtgtccatgtctcgctacatt
cctcatcctgccctggtggtgtcggtcaccctcacctccgtacgcacagagaccggcatc
acgctcaaagccccacagcaggcctgtatggcagacagcatcatactgaacctggcaggc
cagctcatcatgctacagagagaccgttctggaccccagatacaggagaagctgccgttc
tgtcctccagtggttctggctcagtatgtagagaatgtgtggacgacgtgtcgcagtaac
aggaagaagcgccacctactggaggctctgtggctgtcgtgtggagaggctgggatgaag
gtgtggctccccttgttccctcgtgaccatcgtaagccccactccttcctgtcccgtcgc
atcatgctccccttccacatcaacatctaccccctggctgtgctgtttgaggatgctctg
gttctgggagcttccaacgagacggtgctctatgacagcctgcagggtcccagagagggc
cgggagtccctagaggggttgttcccctactgcacggtggagaggacttcccagatctac
ctccaccacatcctgaggcaactcctggtccgtaacctgggggagcaggcccttctcctg
gcccagtcctgtgcagagctcccctacttcccccacgtcatggagctcatggttcacgtg
gtgctggaggaggaggccacctcccgggagcccatccctgacccgctgctgcccaccgtg
gccaagttcatcaccgagttccccctgttcctccagaccatcgtgcactgcgccaggaag
acagagtttgccctgtggaactacctgtttgctgccgtgggcaaccccaaggatctgttt
gaggaatgtctgatggctcaggacctggacaccgctgcatcctatctcattatactacag
aacatggaggttccagcggtgagcaggcaacacgctacgctactcttcaacacggctctg
gagcagggcaagtgggacctctgtcgtcacatgatccgattcctcaaggccattggctct
ggggagatggagaccccacccccaacaccaaccattcaggaacccagttcgacaggaggt
tttgagttattcaggaatcgcagcatcagtctgtctcagtcagctgacagcatcgctgct
gggaagtttaacctacagaagacctttagcatgccttctgggccctctgttaaggggtct
gacaggtggcctaaggacagtgactgtgcagagaacatgtacatagacatgatgttgagg
cgtcacgcccgccacctccttgagcacgtcagactaaaagagctgggttgtttctctgcc
cagctgggcttcgagctgattggctggctgtgccacgagcgcacgcgggtggcgcgggtt
gatgactttgtcatggcgctgaagtgtctccacaaggacttcctgtggccgtttcctgtc
atcccagccggctccatcagctcgcctttcaagaacggacaccgcaggacagtgctgagc
cagcatctactgaagtcccagtcagcagacagcctgttgaacagtgacatggacacagcg
cccccgcaggccgcagcacgcaacagcaaccacacctggctagacgggctgggggctctt
ggacctacagagcctacagagatggacactgccttgtcccacggggggccacagacacag
gaggccttcctctctccactaaccaacaaaacggaggagtgcagtatcggctctgccaca
gacctgacagagaccagcagcatggtggatggagactggaccatggtggatgagaacttc
tctactctcagtctgacccactctgagctggaacacatctccatggagctggctaacaag
ggaccacacaagtcccaggtccagctacggtacctcctgcatgtgttcatggaggctggc
tgtctggagtggtgtgttgtgattggtctgatcctgagagaggccgcagtcatcaagcag
gtggtcaacttcctggacagccccgaggttccccctgagacagtccagagtgtccgctcc
ggcctgctaggggtcgacgcatgggcctccacagactgcctgggctataagcccttcctg
aacatgatccggccccagctacagaagctcatagagacttctgtagagcagatccagcct
gaagccttcctgccaggggcttccaactcgaagctggctgagccccagcccggaggcccc
agtgcggaagacagtagggggcctgctctcctgggtctggcccttcctttggagccccct
ggggggttagggacagaggacggcagagttccagaggagcaggaggaacaggcagtggac
gagggggtgtacgactgcactctgtcctga
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