Salvelinus namaycush (lake trout): 120044927
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Entry
120044927 CDS
T07522
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
120044927
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120044927
03041 Spliceosome [BR:
snh03041
]
120044927
03009 Ribosome biogenesis [BR:
snh03009
]
120044927
03016 Transfer RNA biogenesis [BR:
snh03016
]
120044927
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
120044927
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
120044927
Spliceosome [BR:
snh03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
120044927
Complex C
U4/U6.U5 tri-SnRNP related factors
120044927
Ribosome biogenesis [BR:
snh03009
]
Eukaryotic type
Pre-60S particles
Helicases
120044927
Transfer RNA biogenesis [BR:
snh03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
120044927
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
120044927
NCBI-ProteinID:
XP_038845595
UniProt:
A0A8U0QM39
LinkDB
All DBs
Position
Sna3:10376951..10438207
Genome browser
AA seq
1035 aa
AA seq
DB search
MADAFGDDLFSVFDEEQTSSTKKKSPIPEKGKATSNDDKGEKNEPTAAKTKREADNDGTD
VVFGKKAKLETVSTEEINLADCMPKVKVEPVETVEGCNHEVALPANEEYTQLKPRVGKAA
KEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALRGKQRVIFTSPIKA
LSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVSWVIFDE
IHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNAKQFAEWICHLHKQPCHVVYTDFRP
TPLQHYIFPAGGDGLHLVVDENGEFREENFNTAMQVLRDTGDSGGSSGGGKWDTKGRKGG
TRGPSNVFKIVKMIMEKNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKQLVEEVFNNA
VDCLSDDDKKLPQVENVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAM
GINMPARTVLFTSARKFDGKDFRWITSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPAV
GKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMGK
LEKMYNAIEIPNEESVVTYYKIRQQLAKLGKEIEEFVHKPKYCLPFLQPGRLVKVKNEDV
DFGWGVVVNFSKKSNVKASTGDADPLYVVEVLVHCSQESVKNAATEAAKPAATGENGEMQ
VVPVMLRLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGVPLLDPIDDMGIKD
PGLKKIIQKVEAFEHRMYSHPMHSDPSLEAVYSLCEKKALIAGDIKAAKRELKKARTVLQ
MDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMVFNGLFNDLTAEQVTA
LLSVFVFQENANEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEVDEETYLDKFRPHLM
DVVYTWANGSTFAQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELEKKFADGI
TKIKRDIVFAASLYL
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcctttggagacgatttgttcagcgtgttcgatgaagaacaaacatcttca
actaaaaagaaatcaccaatacctgaaaaggggaaagcaaccagtaatgatgataaaggc
gaaaagaacgagcccactgctgccaagaccaagagggaagcagacaacgacgggacagat
gtggtgttcgggaaaaaggccaagctggagactgtctctacagaggagatcaatcttgca
gactgcatgcccaaagtgaaggtggagccggttgagacagtggaaggatgcaatcacgag
gtggctctgccagccaatgaggagtacacacagcttaagcctcgtgtggggaaagcagcc
aaggagtaccccttcattctggatcccttccaacgtgaggccattctgtgtatagacaac
aaccagtcagtgctagtgtctgcccacacctctgcaggaaagactgtctgtgcagagtat
gccatagctctagccctgagagggaagcagagggtcatcttcaccagccccatcaaggcc
ctgagtaaccagaagtacagagagatgtacgaagagttccaagatgttggcttgatgact
ggtgatgtcaccatcaaccccactgcctcttgccttgtcatgaccactgagatcctgagg
agcatgttgtaccgagggtcagaggtcatgagagaggtgtcctgggtcatctttgatgag
atccattacatgagagatgcagagcgtggcgtggtctgggaagagaccatcatcctgctc
cctgacaatgtccactatgtcttcttgtccgccaccatccccaacgccaagcagtttgct
gagtggatctgccacctccacaaacagccctgtcacgtggtgtatactgactttcggccc
acccccctgcagcactacatcttcccagcaggtggcgacggacttcaccttgtggtggat
gagaacggagagttcagagaggaaaacttcaacacggccatgcaggtgctgagagacaca
ggggactctgggggcagcagcggaggtggcaagtgggacaccaagggacgcaaaggagga
acacgagggccgtccaacgtgttcaagatcgtgaagatgatcatggagaagaacttccag
ccggttatcatcttcagcttcagtaagaaggagtgtgaggcctacgccctgcaggtgtcc
aagctggacttcaacacagatgaggagaagcagcttgtagaggaggtgtttaacaacgct
gtagactgtctgtctgacgatgacaagaagctgcctcaggtagagaatgttctaccacta
ctgaagagaggtatagggattcaccacgggggactgctccccatcctgaaggaaaccatt
gagatcctcttctctgaggggctaattaaggcgttgtttgccacagagacctttgccatg
ggcatcaacatgcctgcccgcaccgtcctgttcaccagcgcacgcaagtttgacggcaaa
gacttccgatggatcacgtctggcgagtacatccagatgtctggccgagctggcaggaga
gggatggacgagagaggcattgtcatcttcatggttgatgagaagatgagccctgcagtg
gggaaacagctgctcaagggctcagctgaccctctcaacagtgcattccacctcacctac
aacatggttctcaacctgttgcgagtggaggagatcaacccggagtacatgctggagaag
tctttctaccagtttcagcactacagggctgtgcccggcgttgtagagaagatggggaag
ctggagaagatgtataacgccatagagatccccaacgaggagagtgtggtcacttactat
aagatccgccagcagctggctaaactgggcaaagagatcgaagagtttgtccacaaaccc
aagtactgccttcctttcctccagcctggtagactggtcaaggtcaaaaacgaagatgtt
gactttggatggggcgtggtcgttaatttctcaaagaagtcaaacgtcaaggccagtaca
ggtgatgcagaccctctgtacgtggtggaggtgctggtccactgtagtcaggagagtgtg
aagaatgcagctacagaggctgctaaacctgctgccactggggagaacggtgaaatgcag
gtggttcctgtgatgctccgcctcctgacctctatcagttccgtccgtctctacatcccc
aaagacctccggccttatgacaacagacaaagcatgctgaaatccatacaggaggtgcag
aagcgcttcccagacggagttcccctgctggaccccattgatgacatgggcatcaaggac
ccaggcctgaagaagatcatccagaaggtggaggcgttcgaacacaggatgtactcccac
cccatgcactctgaccccagcctggaggctgtctactccctctgcgagaagaaagccctg
attgcaggggacattaaagcggccaagcgggagctgaaaaaggctaggaccgtcctgcag
atggacgagctgaagtgcaggaagcgtgttctgagacgtctggggttcgctacttcctct
gatgtcatcgagatgaagggcagagtggcctgtgagatcagcagtgctgatgagctgctg
ctgactgagatggtgttcaacggtctgttcaacgatctgactgcagaacaggttactgct
ctgctcagtgtcttcgtcttccaggagaatgcgaatgagatgcccaaactgacagagcag
ctggctggaccactgagacagatgcaggagtgtgccaagcgcattgccaaggtgtctgca
gaggctaaactggaggtggatgaggagacctacctggacaagttcaggcctcacctgatg
gatgtggtctacacctgggctaacggatccaccttcgctcagatctgcaagatgaccgac
gtcttcgaaggtagtatcatccgctgtatgcgtcgcctggaagaactgctgcgtcaaatg
tgtcaggcagccaaggccatcggcaacaccgagctggagaaaaagtttgcagatggtatc
acaaaaatcaagagggatattgtgtttgctgccagtctatatctgtga
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integrated database retrieval system
