Salvelinus namaycush (lake trout): 120045056
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Entry
120045056 CDS
T07522
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM23
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
snh04121
]
120045056
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
snh04031
]
120045056
Enzymes [BR:
snh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120045056
Ubiquitin system [BR:
snh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
120045056
GTP-binding proteins [BR:
snh04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
120045056
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
SRPRB
G-alpha
zf-RING_UBOX
zf-RING_5
zf-B_box
Gtr1_RagA
MMR_HSR1
zf-RING_2
zf-C3HC4
CEBP_ZZ
Motif
Other DBs
NCBI-GeneID:
120045056
NCBI-ProteinID:
XP_038845823
UniProt:
A0A8U0UAN6
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All DBs
Position
Sna3:complement(18814519..18822772)
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AA seq
579 aa
AA seq
DB search
MAAAVGVNKQGTAATMDVCVRHVRGATSSTVKVLECGVCEDVFSLQGDKVPRLLLCGHTV
CHDCLTRLPLHGRAIRCPFDRQVTELGDSGVWGLKKNFALLELLERLQNGASSQLSMAED
ALTGMGESIIRCDEDESHTASMYCTVCATHLCADCSQLTHSTRTLAKHRQVPLADKPHEK
TLCPQHQVHAIEFVCQEELCQPGPLMCCVCKEYGKHQGHKHAVLEAEANQIRASILDMAH
CIRTFTEEVSEYSRKLVGIVQQIEGGERIVEDGIGMAHTEHVPGTAESARSCVRAYFADL
HETLCRQEEMALSVVDAHVRERLIWLRQQQEDMTILLSQVSTACLHCEKTLQQDDCRVVL
AKQEINRLLETLQKQQQQFTELADHIQLDAGIPVTFTKDNRVHIGPKMEIRVVTLGLDSA
GKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAV
VFVIDSCHRDRLMEAHSELAKLLTEKELRDALLLIFANKQDVPGAVSVEEMTELLSLHKL
CCGRSWHIQGCDARSGMGLHEGLDWLSRQLVAAGVLDVA
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgctgtgggtgtaaacaagcagggaaccgcagcaacgatggacgtctgtgtt
cggcacgtcaggggggccacaagcagcacggtgaaggtgttggagtgtggggtgtgtgaa
gatgtcttctctctccagggggacaaggtcccccggctgctgctctgtggtcacacagtc
tgtcatgactgtctgacccggctgcccctgcatggtagagccatccgctgcccctttgac
agacaggtcacagagctgggggactctggtgtgtggggtctgaagaagaactttgccctg
ctggagcttctggagaggctgcagaatggagcgtccagccagttgagtatggcagaggac
gccctaacaggcatgggagagtctataatccgctgtgacgaggacgagagccacacggca
tctatgtactgcaccgtgtgtgccacccacctgtgtgccgactgctcccagctcacccac
tccacccgcaccctagccaagcaccggcaggtacccctggcagacaagccccacgagaag
acactatgcccgcagcaccaggtccacgccatcgagttcgtctgtcaggaggagctctgc
cagcctgggccgctcatgtgctgcgtgtgcaaagagtacggcaagcaccagggacacaag
catgcagttctggaggcagaagccaatcagatccgtgcgtctatcctggacatggcccac
tgtatccggacgttcacagaggaggtgtcggaatattccaggaagctggttgggatcgta
cagcagattgagggaggagaacggatagtggaggatggcatcggcatggcacacaccgaa
catgtcccaggcacggcagagagcgcgcggtcctgcgtacgggcctacttcgccgacctc
cacgagacgctgtgcagacaggaggagatggcgctcagtgtagtggacgcacatgtcagg
gaaaggctcatttggctccggcaacagcaggaagacatgaccatcctactgtcccaggtg
tccacagcctgcctgcactgcgagaagacactgcagcaggatgactgcagagtggtcctg
gccaagcaggagatcaacagactgttggagactctgcagaaacagcagcagcagttcact
gagctggccgaccacatccagcttgacgctggtatccccgtcacattcaccaaggacaac
cgggtccacatcggccctaagatggagatccgggtggtgaccctgggattggatagtgct
gggaaaaccaccatccttttcaaactgaaacaggacgagtttatgcagcccatccctacc
ataggttttaatgtggagacagtggagtataagaatctcaagttcaccatctgggacgtt
ggtgggaaacataagctacggcctctctggaagcactattacctgaacacacaagcggtg
gtgtttgtgattgacagctgtcacagggataggctgatggaggcccacagtgaactggcc
aaacttctgacagagaaggagctgagagacgccctgctgctcatcttcgccaacaaacag
gatgtcccaggggctgtgtcggtggaggagatgacggagctgctgagtctccacaagctg
tgctgtgggaggagctggcacatccagggatgtgatgcccgcagtggcatggggctccac
gagggcctggactggctgtcccgacagctggtggctgcaggtgtactggatgtggcctag
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