Salvelinus namaycush (lake trout): 120045058
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Entry
120045058 CDS
T07522
Name
(RefSeq) protocadherin alpha-C2-like
KO
K16493
protocadherin alpha
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
120045058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120045058
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120045058
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
120045058
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Protocadherins
120045058
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_FAT4_N
Ig_CLSTN
Ig_Cad99C_N
DUF4307
Motif
Other DBs
NCBI-GeneID:
120045058
NCBI-ProteinID:
XP_038845825
UniProt:
A0A8U0UAU0
LinkDB
All DBs
Position
3:complement(19048377..19079480)
Genome browser
AA seq
992 aa
AA seq
DB search
MAVTGICNCIGNNVALSFVVFFLFCGLSLGQLRYSIPEELENGAAVGDLVQDLGLDIRKL
SNRKIKVTTSGKRYVDVNPKNGKLIVNERIDRETLCDLSSTCFIHLEVLVENPSEVHSVE
VEIVDANDNAPKFPRDEYQLEITESALPGSRFPIENALDPDVGSNSVRLYRLSPNEHFAL
DSNKPSINSKHIELVVKKPLDRELAPYHQLILTAADGGTQAKTGSAKINVRVLDTNDNVP
VFDSSVYKVKLLENSPKDTLVIKLNATDLDEGTNGEVYYSFSSYTPERVRQMFSMDSNTG
EIRVRSNVDYEETNSYEMYIQAMDKGPGAVAAHCKVVVEVVDVNDNVPEIVLSSLSSPVR
EDARADTVVALISVTDRDSGANKQVSLEIPLGLPFKIKSFRNYYTLVTSAFLDRETTAAY
NVTLSATDGGTSPLSSQKTIQVDVADVNDNPPRFEQTSYTVYVTENNAPGASLCTVKAQD
SDVNENGRITYTVLNDNNHGIPVTSYVSVKAETGEAYALRAFDYESLREFHFQVKAQDGG
IPPLSRVATVYIYIMDQNDHVPEIVNPPGNSTRSTETVLKNAEAGALVTKVVAYDADAGP
NAWLIYVLDQCTDLELFKVHEHTGEIRTTRRVLEDNSTSFSMTVLVRDHGQPPLSSTATV
NVAVMEVPPKVTPDPKRVIRPHSTLLFSNLTLYLIVALSATTFVFLVTVVVLAIVRCHAY
CTQPGSCSPCCVSQKTPPDSGSSSIVGGAGGGGGGQSNNNVALRRDLKVDPHYIEVRGNG
SMTKTYCYKTCLTATSGSDTFMFYNTGRPISGTWGSERFFTGGSGFVRRLSMPDASLQVC
PEPKAPNADWQYSTSLRTGMQSSVHMEESSVMQGAQGMLVQNWPTVSSAADGEGGELSPP
VGAGIDSNSWHFRYGAGPGYGPPQVLKPGDIPPEAFIIPGSPAILSIRQGPGGEDDKSDF
ISFGKKEEAKKKKKKKKEKKDKKEKGKEDVDE
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggctgttacggggatatgtaactgtataggaaacaatgtggctctttcttttgttgta
tttttcttattttgtggcctttcacttggacaactacggtactctattcctgaggaatta
gaaaatggagcggcggtgggggatcttgtgcaggatttggggttggatatccgaaagctc
tccaatcgaaagataaaggtaaccaccagtggaaaacggtatgtggatgtcaatcccaaa
aatggaaaattaattgtcaatgaaagaatcgacagagagacgttgtgtgatttaagcagc
acctgttttatacatttagaggtgcttgttgaaaacccatccgaggtgcacagtgttgag
gtggagattgtggatgctaatgacaatgcgccgaagttccctagagatgagtatcaattg
gaaattacagaatcggctttaccagggtctcgtttccccattgagaatgccctggatccg
gacgtgggatccaactccgttcgtctatatcgactcagcccaaacgaacacttcgcgctg
gattccaacaaaccctccatcaacagcaagcacattgagctcgtggtcaaaaagcccctt
gaccgcgagctggcgccttaccaccaattaattctgactgctgcagatggcggaacacaa
gcaaaaaccggttcagctaaaattaatgtgcgagtcctggacaccaatgacaatgtccct
gtatttgacagctcagtgtacaaagtaaaattgttagaaaactcaccaaaagacacactg
gtcatcaaattgaatgccacagaccttgatgagggtaccaatggtgaggtgtattattct
ttcagcagctacactcctgagagagtcagacagatgttcagcatggacagcaacacggga
gagatcagagtgaggagcaatgtggactatgaagaaaccaactcttatgagatgtatatc
caggccatggataaaggccctggtgctgtggcagcccactgtaaggtggtggtggaggtg
gtggatgtgaatgacaatgtcccagagatagtcctgtcttctctctccagcccagtgagg
gaggatgcccgggctgacaccgtggtggccctgatcagtgtcacagaccgggactctggt
gctaacaaacaggtgagcctggaaatacccctgggcctccccttcaagatcaagtccttt
agaaactactacaccctggtcacctccgctttcctggaccgtgaaaccaccgctgcctac
aatgtcaccctcagcgccactgacggcggcacctcacccctctcctcccaaaagaccata
caggtggatgtggctgatgtgaatgacaacccgccacgcttcgagcagacctcctacacg
gtctatgtgacggagaacaacgcccccggggcctcgctgtgcactgtgaaggcccaggac
tcagatgtcaacgagaatggacgcatcacctacactgtcctcaatgacaacaaccacggg
atccctgtcacctcttacgtctctgtgaaggccgaaacgggagaggcctatgccctgcgc
gcctttgactatgagtcactcagggagttccacttccaggtcaaagctcaggatggaggc
attccgcccctcagccgggtggccactgtctacatctacatcatggaccagaacgaccac
gtgcctgagatcgtcaatcccccaggcaacagtacgcgctccacagagacagtcctgaag
aacgctgaggctggcgccctggtgaccaaggtggtggcgtacgacgcagacgcaggtccc
aatgcctggctgatctatgtgttggatcagtgcacagacttggaactgttcaaggtgcac
gaacacacgggggagatccgcaccacgcgcagggtcttggaggacaactccacctccttc
agcatgactgtactggtgagagaccacggccagccgcctctctcctccactgccactgtc
aatgtggctgtcatggaggtgccacccaaggtgacccctgaccctaagagggtcatccgg
ccccacagcaccctgctcttttctaatttgaccctctatctgatcgtggctctgagcgcc
accacctttgtgttcctggtaactgtggtggtgctggccatcgtgcgctgccatgcctac
tgcacccagcctggctcctgctccccctgctgcgtatcccaaaagaccccccctgacagc
gggagcagcagcatagtaggtggtgctgggggtggtggtgggggacaatccaataacaat
gtggcgctgcggagagacctcaaggtggatcctcactacattgaggtgcgtgggaatggc
tctatgaccaagacctactgctacaagacctgtctgacggccacctcaggcagcgacacc
ttcatgttctacaacacaggccggcccattagcggcacctggggttctgagcgcttcttc
acaggaggtagtgggtttgtacggagactaagcatgcccgacgcttcactgcaagtatgc
ccagagccgaaggccccaaatgctgactggcaatactccacttctctgagaacagggatg
caaagctcggtccatatggaggagtcgtcagtgatgcagggagcccaggggatgctggtc
cagaactggcccacagtgtccagtgctgcagatggtgaggggggtgagctgtcccctccg
gttggagctggcatcgacagtaacagctggcacttccgttacggggctggccctggctac
ggcccccctcaggtcctgaagcctggagacattccccctgaagccttcatcattcccggc
tctcccgccatcctctcaatccgccagggcccgggaggagaggatgacaagagtgatttc
atttccttcggcaagaaggaggaagccaagaagaagaaaaagaagaagaaggagaagaaa
gacaagaaagaaaaggggaaggaggatgtggacgagtag
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