Salvelinus namaycush (lake trout): 120045062
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Entry
120045062 CDS
T07522
Name
(RefSeq) roundabout homolog 1-like
KO
K06753
roundabout, axon guidance receptor 1
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120045062
Cell adhesion molecules [BR:
snh04515
]
Immunoglobulin superfamily
ROBO family
120045062
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
V-set
fn3
C2-set_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
120045062
NCBI-ProteinID:
XP_038845830
UniProt:
A0A8U0QLY4
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Position
Sna3:complement(20086988..20271983)
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AA seq
1621 aa
AA seq
DB search
MMPARSVGIYFLLGFIHICSGSRLRQDDSPPRIVEHPSDLIVSKGEPATLNCKAEGRPTP
TVEWYKDGERVETDRDNPRSHRMLLPSGSLFFLRIVHGRRSKPDDGSYVCVARNYLGQAV
SHNASLEVAILRDDFRQNPADVMVAAGEPAVLECQPPRGHPEPTISWRKDGTNINDRDER
ITIRSGKLMITNARKSDAGKYICVGTNMVGERESEIAELTVLERPGFVKRPSSVMVLADE
SVEFHCEAQGDPVPTVRWRKEDADLPKGRYEILEDHTLSVRDVRLSDEGSYTCVVENMVG
KAEASATLTVHVFTVPPAFAMRPRNQVVAVGRTVTFQCEATGNPQPAIFWQREGSNSLLF
SYQPPQPFSRLSVSQTGSLTIADAQRSDAGYYSCQALNIAGSVITKALLEVTDMVSDRPP
PVIRQGPSNHTVPVDSTVVLGCQATGTPTPTVHWKKDGVMVSPEEARITQIDTGALQIRY
AKLGDTGVYTCVASSPSGEASWRAYLEVEEFGVVVQPGRPTDPNLIPSGPSKPDVTDVSR
TSVTLSWKSNPNAGATPTSYVIEAFSHASGSSWVTLADHVKMETFVLKNLKPGAVYLFLV
RAANAYGLSDPSPITDAVRTQDTPPTSQGVDHRQIQRELGDVVIHLHNPTILSSSSVRVQ
WTVEQQSPYIQGYKVMYRASAELGQPGGQWGVFEVWNPGEDGAVVPQLKKGVTYEFKVRP
FFDEFQGADSEVKVARTPEEAPSGAPRGVTVTKSDANGTAILVAWQPPPEEEQNGMVQEY
KIWCLGNESRYHVNRTVDGSTFSVLIPSLVPGIRYSVEVAASNGAGPGVKSDVTFFQLDS
TGQMMDSREDQDTLSQISDVVKQPAFIAGIGATCWVVLMVFSVWLYRHHKKRSGLSSSYA
GIRKVPSFTFTPTVNYQRGGESVCSAGRPGLLNMGESVNQPWLPDSWPNACANHKDCSIN
CCNTGNGTSDSNMTTYSRPADCIANYGSQLENQQGGLLGPEQAVYSDVDLSNKLNELKTF
NNPSLCYMGPGAGPPTPYEPTPYATTQLIQSSILNKAGAAGAAAGAPDIRCWNQPPSQLQ
KAHMQYNIMEQSNRLNKDHYRGDGPLQGTVPYNQAHEHHTGGSHHSSDRGSNSTSGSQSH
KKGIRTPKLPKTNTVNRGEPLHPSSAKPPPSQSCDEYTLPMEKSFNPDALCPMLPSRMYL
HPDEMEEEEAEEGMDRCPTPPVRGAASSPEGLSYSHQSTATLTPSPQGDQHNGLHNGTDH
HRQHVASPPPSPLPLSPPHTYGYISSPLALDTDGQEEEEEEEDEEEAGDETDADMAQSHY
HQHQNNHQPHQQLRHHQHPRSPRRLHLRGLEQTPASSTGDLESSVTGSMINGWGSASEED
NGSSGRSSAVSSSDGSFFTDADFAQAVANTGDYTAGLRMARFPEDTGPAGRRHQRPSSPL
STDSNMSSAVMQKRPPKRHKQHQAQVGHQGHQKRNDFTDDSCMPLKSPSHMSRCGYEVRG
ATLPRIGSGEGRGRRGSAGGQRTREGSVERREGQDKNRTPQGGKGSSKAHQPPGSEDIPP
YSRPSFPSVQGQSQAQSSSSSMSSRGSGGRRRDGARRNPTDTLPSITGFQTQEEELELLE
S
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atgatgcctgcgcgttctgtgggtatttactttctactcggatttattcacatttgttca
ggatctcgtctgcgtcaggatgactcccctccacggatcgtggagcacccctctgacctc
atcgtgtccaagggggagccggccaccctcaactgcaaggcagaggggcgtcccaccccc
acggtggagtggtacaaggacggggagcgggtggagacagaccgggacaacccccgttcc
caccgcatgctgctgcccagcggctccctcttcttcctgcgcatcgtccacggccgacgc
agcaagccagacgacggcagctacgtgtgtgtggcccgtaactacctgggccaggccgtt
agccacaacgcctcactggaagtagccatactgcgtgatgactttagacagaacccagcg
gatgtgatggtggcggcgggggaacctgccgtactggagtgccaacccccccgtgggcat
cctgagcccaccatctcatggaggaaagacggtaccaacatcaatgacagggatgagcgc
atcacgatccgcagtgggaagctgatgatcaccaacgccaggaagagtgacgcagggaaa
tacatttgtgtggggaccaatatggtgggagagagggagagcgagattgcagaattgact
gttctagagcgcccagggtttgtgaagaggccaagtagtgttatggttctggcagatgag
agtgtggagttccactgtgaggcgcagggagatccggtccccactgtccgctggaggaaa
gaggatgcagacctacccaaggggaggtatgagatcctagaggaccacaccctgagcgta
cgagatgtaagactgtcagacgagggctcctatacatgtgttgtggagaacatggtggga
aaggctgaggcatccgctacactgaccgtacacgtcttcactgtgcccccagcgtttgcc
atgcgccccagaaaccaggtggtggcggtggggagaacggtcaccttccagtgtgaggcc
actggcaacccccagcctgctatcttctggcagagggagggcagcaatagcctgctattc
tcctaccagcccccccagcccttcagccgtctctctgtgtcccagactggcagtctgacc
atcgcagatgcccagcgctctgacgccgggtactacagctgtcaggccctcaacattgct
ggctccgtcatcaccaaggccctgctggaggtcactgacatggtgtcggaccgcccccct
cccgtgatccgacagggcccgtccaatcatacggtacctgtggatagcacagtggtcctg
ggttgccaagcaacagggacccccacaccaacagttcactggaagaaagacggggtgatg
gtgtcccccgaggaggcccgcatcacccagatagacacaggagccctgcagatccgctac
gctaagcttggagatacaggcgtctatacatgcgtggcgtccagccccagtggagaggca
tcctggagggcttacctggaggtggaagagttcggagtagtagtccagccaggtcgaccc
acagaccctaacctgatccccagcggcccgtccaagcctgacgtgactgacgtgagccgc
acctcagtcactctgtcctggaaatccaacccaaacgctggggccacgcctacctcctat
gtcatcgaggcattcagtcacgcgtcggggagtagctgggtgactctggctgaccacgtg
aagatggagacctttgtcctgaagaacctcaagccaggtgcagtttacctgtttctggtg
agagcagccaatgcctacggcctcagtgaccccagccccatcactgatgcagtcaggaca
caagacacccctcccaccagccagggggtagaccatcgtcagatccagagggagctgggg
gatgtggtgatccatctccacaaccccaccattctctcttcctcttccgtcagggtgcag
tggacagtggagcagcagtctccatacatccagggttacaaggtgatgtacagggcgtct
gcggagctgggccagccgggggggcagtggggcgtgttcgaggtgtggaaccctggggag
gacggtgctgtggtgcctcagctgaagaagggagttacctacgagttcaaagtgcgtccc
ttctttgatgagttccagggagcggacagcgaggtgaaggtggccagaacgcctgaggaa
gctcccagtggagccccccgaggtgttaccgtgacgaagagtgatgccaatgggaccgcc
atcctggtcgcttggcaaccgcctcctgaggaggaacagaacggaatggtacaggagtac
aagatctggtgcctgggcaatgagagccgttaccacgtcaaccggacagtagatggctcc
accttctccgtgctaatccccagcctggtgccagggatacgctacagtgtggaggtcgcc
gctagcaacggtgctggcccaggggtcaagagcgatgtcaccttctttcaacttgactct
acaggtcagatgatggacagtcgtgaggatcaggacacattgtctcagatctcagacgtg
gtcaaacagccggcgttcatcgcgggcattggtgctacctgctgggtggtcctcatggtg
ttcagtgtgtggctctaccgccaccacaagaagaggagtggcctcagcagcagctacgcc
ggcatacgcaaagttccatctttcaccttcactcctacagtgaactatcagagaggagga
gagtctgtctgcagtgctgggagacccgggctgctgaacatgggcgagagtgtgaaccag
ccgtggctgccagactcctggcccaacgcctgtgccaaccacaaagactgcagcatcaac
tgctgcaacactggaaacggcaccagcgacagcaacatgaccacctacagccgcccagct
gactgcatcgccaactatggcagccagttggagaaccagcaggggggtctactggggcct
gaacaggccgtgtacagcgacgtggacctctccaacaaactcaacgagctcaagaccttc
aacaaccccagcctgtgctacatgggcccaggggcagggccgcccaccccctacgagccc
accccctacgccaccacccagctcatccagtctagcatcctaaacaaggctggagctgca
ggggctgcggctggggcccctgatatacgctgttggaaccagcccccctcccagctgcag
aaagcacatatgcagtacaacatcatggagcagagcaacaggctcaataaagaccactat
agaggagatgggcctctgcaaggcaccgtcccgtacaaccaggcccacgaacaccacaca
ggaggctcccatcacagctctgacaggggcagcaacagcacctctgggagccaaagtcat
aagaagggaattcgcacccccaaactgcccaaaacgaacacagtgaaccggggtgaacct
ctacacccttcctctgccaagcccccaccaagccaaagctgtgacgaatataccctgccc
atggaaaaaagctttaacccagatgccctatgcccaatgcttccctcgcggatgtacctg
catccggatgagatggaggaagaggaggcggaggaggggatggataggtgtcccaccccc
cctgtcagaggggcagcctcatcccctgagggtctgtcctacagtcaccagtctacggca
actctcaccccctccccccagggagaccagcacaacggcctacacaatggaacagaccac
cacagacaacacgtggccagcccccctccttccccgctccccctctcccccccacatacc
tacggctacatctccagccccctggcactggatactgacggccaggaggaagaggaggag
gaggaggatgaagaagaggcaggggatgagacggatgcagacatggcacagagtcactac
caccagcaccaaaataaccaccagccccaccagcaactgcgccaccaccagcacccccgt
tccccacgcaggctgcacctccgggggctggagcagacgccggcctccagcacgggggac
ctggagagctccgtgacgggctccatgattaacggctggggctcggcctccgaggaggac
aacggctcgtcaggacgctccagcgcagtcagctcctcagacggatccttcttcacagac
gcagacttcgcccaggctgtggccaacactggagactacacagcaggcctacgcatggcc
aggttcccagaggacacaggaccagcagggcgaagacaccagcgtcccagcagcccactg
tccacagacagcaacatgagctctgcagtgatgcagaagagaccgcccaagaggcacaag
cagcaccaggcccaggttggccaccaaggtcaccagaagaggaacgacttcacagacgac
tcatgcatgcccttgaagtcccctagtcacatgtcgcggtgtggctatgaggtgagaggt
gccacgctcccgaggattggctctggggagggtcggggccggagagggagtgcaggaggc
cagaggaccagagagggctctgtagagagacgggagggccaggacaagaacaggactcca
cagggaggcaaggggagtagcaaagcccatcagccaccaggttctgaggacatccccccg
tacagcaggccctccttcccctcggtgcagggccagagccaggctcagagctcctccagc
tccatgtcctcccggggctcaggaggacggaggagagatggggcccgcaggaaccccaca
gacacactgcccagcatcacaggcttccagacccaggaagaggagctagagcttctggag
agctga
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