Salvelinus namaycush (lake trout): 120045108
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Entry
120045108 CDS
T07522
Name
(RefSeq) dmX-like protein 1
KO
K24155
rabconnectin-3a
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
120045108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
snh04131
]
120045108
Membrane trafficking [BR:
snh04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
120045108
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
120045108
RAVE complex
120045108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
Beta-prop_IFT140_1st
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_Vps41
PEP5_VPS11_N
Beta-prop_SPT8
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
120045108
NCBI-ProteinID:
XP_038845962
UniProt:
A0A8U0QNY7
LinkDB
All DBs
Position
Sna1:9003181..9066696
Genome browser
AA seq
3024 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSINNQPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDSSLQGGQVAASYGSIVCVFEPVQLMNQKDRTSAELSYQWQKSGQFVLQSIVRNLAW
DPTGTRLLTGSASLQLWSNISDGFDEEGEQTDITIGDPRCPWRCIWHCKTASPIQLMKFS
PDGEFFATAGQDDCLVKVWYGTSKWQSGVTKLFTPPEHNAQGELDFSFVYLAHPRSVTGF
SWRKTSKYMPRGSVCNVLLTCCKDSVCRLWAETLLPSDSLLSGHTLSHVNNNGQSSDSLK
SSGSKKTPSRIKTQDRNPLELNLQESWRAPLRGVAQPSLTGCLPTQQNSHHNHKTNSVPH
ANALCHFHIAASINPATDIPLLPSITSLCGGDDEEPGGPFTVHWLNNKELLLTLAMEVFL
QQLRGSVEQNHSEHSQEEPDYEEVEEASRRAAERGPDVASTHLPAAAVEHQVEVLLEDWN
RGADMLFSIHPMDGSLLVWHVDWLDEYQPGMFRQVQVSFVSRIPVAFPTGDANSLSRSVV
MYACNKNVDLAIQHGRQRPAGLPHSSSVLIPYGQSKATSYSSSLRLSIFTPNVLMISTHS
DGSLNQWAVSFAEESAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLTTSHHNALRTP
DVDSVPAPSTTLSQPLGGGPSRVSLGAVSQDPNAIYSELILWRVDPVGPLSFSGGVSELA
RINSLHSSAFSNVAWLPTLIPSNCLGVYCNSPSACFVASDGHTLRLYQAVIEAKKLLSEL
SNPDISKYVGKVFNIISQQSTAKPGCIIELDAITDFQGKETQLLHVFEEDLILGSERRDA
TQEAPATETASSQPGFSARFFLVVVEFTQTGRSFLHMWHLQLAAGQITMDETGAPPEKEN
VTLSPMNSSFSFETFNSPSAQKNKPCTSNLQSASRLTLATHRLYSQELALPDGVEVISVT
PSAGHLSASSLQPAGGAPYLLATSCSDGKVRFWRCRVAAVEPDTKELTYTWEEWPLLVEE
GLGNSSAVTVSGRPVTVSCCHTSRIAVAYRHNPSPHLSPNHLSPNPQQGVREPLVHVGLF
QCESTGGSHWVLEQTLVLDASTPTGNNNNNMESVVKGLNVENNNLDIYLPNDDCQGTSGK
SLVHLDWVSREDGSHILTVGIGSKLYMYGLLSGKPPELGLPEGPREQSSSRLVLLRSVDL
VSSVEGSLPIPVSLSWVRDGILVVGMDCEMHVYSQWQPPAPAKSTASNTTTTDMGSVSSL
LAAMKQSHEEGLNPAPPKKSLTRSMTSLAQKLSGKRTVYDLPAEMEDYGLFEAAHHLFPT
LPQYHPVQLLELMDLGKVRRAKAILSHLVKCIAGEIVALKDNGTNQDKRFRSRTISAGGS
TSRDPKLFSKGESSDYTEIDSIPPLPLYALLAADEDCSPKPKDKVSSLSGDSGHGSSQTD
AYDELFQSSGVGVDDLEHMDSDQEDGGAKVIDLSQYSPTFFGPEHAQVLSSHLLHSSLPG
LTRMEQMSLMALADTIATTSTDIRESQSRGKGGETLDECGLKFLLAVRLHTFLLTTLPPA
HRAQLLRQGLSTCHYAWAFHSEAEDELLHMLPALQKGDPTWPELRAMGMGWWLRSTNKLR
RCIEKVAKASFQRQNDPLDAAIFYLAMKKKAVVWGLYRSQKNAKMTTFFSNNFGEERWRR
AALKNAFSLLGKQRFQHSAAFFLLAGSLKDAVEVCLEKMQDLQLALVISRLYESEFETSS
TYKRILQRHVLGQDRQLPAHQDPFLRSTAYWVLEDYSRALDTLLEQPAAPNLASSTQAGH
TTQPGTSSTSICSPEVFNFYTYLRTHPLLLRRHFGSSEKTRVGLTAEGRMANSISLVERR
LFFTAAYAHLQAGCPMLALEVLSKMPKVVKRSKLHQDDTTNPDLSETKKEQASDLDWSQP
ALNGFESVSDSLSNSQSDSVLSFDWGQPSVSVQDEALELKWDSDKEEEEDDDPQGLAMKS
ADNTSSVFQDAISPLTETLLDEGDVLMPSEDILAAQLKFSACLKILTTELRTLSTGYELD
GGKLRYQLCQWLEREVVALQRCCSYKPCLPELALGMAGPSGEEEAQAQPGEAQRTRRHWL
QSNQPLLRMFLSYCSLHGSHGGGLASVRMELILLLQESQQDDSVQSAVAPYLHHASIPLL
LACTASAKTVVANPIVHLTNLTHDILHTINALDSPPHPDIVNNEIYVMHTLAASLSACIY
QCLCDGHNHSHVNQFTGIVYQSILSFQHHPVRTVSMEETVLPNTHPAQWPGISTLIRLLN
SAGEESQPGLAVLLCEILTAVFLSLFVHGLATHSSNELFRIVAHPLNSKLWVAVFGGGAR
TPITEKPSQAKSPPAASEEFDRKPRRFKLLSSSTRSASREGPETPSPTSPVVEQETSIFK
EHFVPPELSIWDYFIAKPFLPPSESRVEYDSEESQGSQDEDDDDDEDEFGDFDPNSPSRE
HSNPNSYSWCLMRLAMVQLVLGNLKSFYPMAGHDLLDLPVGSPLCHAVLKTLQRWEQVLL
KRLEIFGGPPSKYISTHPLDETAASGPAILRHKALFEPSNTPFRSSHHSALPVKRLWQYL
VKQEEVQETFIRNIFTKKRDQNESVEDHNENDKCSGMEEPSCNQSEADLGYPGGKARIIH
KDSDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDTEAEAKGDDFLVI
QARDDFNTLHGTTPYTHSSLGTPINMPWLGGLQTGRGAAVLIKRNINNVRRMTSHPTLPY
YLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGALRLWQTNT
TGNTPKPYLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVNPMNSLVHAFS
CHESGATVLSLAPRQQLLITGGRKGWISVLELPHRHQRQSFQAHDSPVKALAVDPTEDSF
ISGSAEGNIKVWSLSTQCLLHQFPNEHARQSLFRNLGTGVMQIEVGPANHIFSCGADGTM
KMRILPDRFSVNNGNLKNDVKFII
NT seq
9075 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttcaccaagtccttactggggctgtcaacccaggggacaattgtttttctgta
ggtagcataaacaaccaaccattcacggcatatgcctctggctgtgacgttgtgattttg
ggcagtgactttgaaaggctacagatcatcccaggagcgaagcatgggaacatccaggtg
ggctgtgtggacagctcactacagggaggccaggttgcagcttcctatggaagtattgtc
tgtgtctttgagccggttcagctcatgaaccagaaggacaggacatcagcagaactgagc
taccagtggcagaagagtggacagtttgttttgcagtccatagtgcgtaacctggcctgg
gaccccacaggcactcgtctcttaactgggtccgctagcctccagctgtggtccaatatc
agcgatggttttgatgaggaaggggaacagacagacatcaccattggtgaccctcggtgt
ccctggaggtgtatctggcactgcaaaaccgcctccccaattcagctcatgaagttctct
ccagatggagaattctttgctactgccggacaggacgactgtctggtcaaagtttggtac
ggcaccagcaaatggcagtctggcgtgaccaagctgttcaccccaccggagcacaacgct
cagggcgagctcgacttctcttttgtctacctggcacacccacgctctgtaacaggcttc
tcctggaggaagaccagcaagtacatgccacggggttcagtgtgcaatgttctactgaca
tgctgtaaggacagtgtgtgtcgcctgtgggccgagaccctgcttcccagtgacagcttg
ctgtccggacacacgctcagtcacgttaataataacggacagagcagcgactcactgaaa
tcgtcaggcagcaagaagactccctctcgtatcaaaacacaggacaggaatcccctggag
ttgaatctgcaggagtcgtggagagcccccttgagaggtgtggcccagccctccctgacc
ggctgccttccgacccagcagaacagtcaccacaaccacaagaccaacagcgtgccccat
gccaacgctctctgccacttccacatcgctgccagcatcaaccctgccacagatatcccc
ctgctgccctctatcacgtcgctgtgtgggggagatgacgaggagcctggcgggcccttc
accgtgcactggctcaacaacaaggagctgcttctcaccctggccatggaggtgttcctg
cagcagctcagaggcagtgtggagcagaaccactcggaacactctcaggaggagcctgac
tatgaggaggtagaggaggcttctaggcgagcggccgagcgaggacccgacgtggcgtcc
acccacctgcctgctgcagcggtggagcaccaggtagaggtgctactggaggactggaac
aggggggcagacatgctgttcagtatccaccccatggatggctctctgctggtgtggcac
gtggactggctggatgaataccagcctggcatgttccggcaggtccaggtgtcctttgtg
tcccggattcctgtggccttccccacgggcgacgccaactccctgagccgcagcgtggtc
atgtacgcctgtaacaagaacgtggacctagccatccaacatggccgccagcggcctgcc
ggcctaccacattcctcgtcggtgctgattccctatggccagagcaaggcgacctcctac
tccagcagcctgcgcctcagcatcttcacccccaacgtgctcatgatctccacgcactcc
gatggctccctcaaccagtgggcggtcagcttcgcagaggagtcggccttctccactgtg
ctcagcgtgtcccacaagtcacgctactgcggccaccgcttccacctcaacgacctggcc
tgccactccctgctgcccctgttgctcaccacctcacaccacaatgccctgcgcaccccc
gatgtggacagtgtccccgccccctcaaccaccctttctcaaccccttgggggcgggccc
agccgggtgtccctgggcgctgtgtcgcaggatcccaatgccatctacagcgagctcatt
ctgtggagggtggatccagtgggaccgctgtccttctctggaggggtgtctgagctggcc
aggatcaactctctccactcctccgccttctccaatgtagcctggctgcccacactcatc
cccagcaactgccttggtgtctactgcaactctcccagtgcctgcttcgtggccagtgac
ggtcacacgctgaggctttaccaggctgttattgaagccaagaaactactcagtgagctc
tccaacccagatatttcaaaatatgtcggcaaagtttttaacatcatcagccagcaatcg
actgctaaaccaggttgtatcatcgagctagatgccattactgacttccaggggaaggag
actcagctgctgcatgtgtttgaagaggatctgattctgggcagtgagaggagagatgcc
actcaggaagctcccgctacagagactgcctccagccagccaggcttctccgcccgcttc
ttcctggtggtggtagagtttacccagactggcaggtctttcctgcatatgtggcacctg
caactggcagctggccaaatcactatggacgagaccggtgctccgcctgaaaaggagaat
gtgaccttgtcgccaatgaacagctcctttagctttgagacgttcaactccccctcggcc
cagaagaacaagccttgcacgtccaacctgcagagtgccagtcgcctcaccctggccact
cacaggttgtacagccaggagctagctcttccagacggcgttgaggtgatcagtgtcacg
ccctcagcaggtcatctgagcgcgtcctccctgcagccggcaggtggcgctccctatctc
ctggccacttcctgttcagacgggaaggtgaggttctggaggtgcagggtggctgcagtg
gagccagacaccaaggagctgacgtacacctgggaggaatggcctctattggtggaggag
gggctgggcaacagcagtgccgtgaccgtgtcaggcagaccagtcacggtcagctgttgt
cacaccagccgcattgcagtggcctaccgacacaaccctagccctcacctgagccctaac
cacctgagccctaaccctcagcagggtgtcagggaaccactggtccatgtagggttattc
cagtgtgagtccacaggtggctcccactgggtgctagagcagaccctcgtcctggatgct
tccactcccactggtaacaacaacaataacatggagagtgtcgtcaagggcctgaatgtg
gagaataataacctggacatctatctgcccaatgacgactgccaggggacgtctggtaag
agtctggtccacctggactgggtctccagggaggacggctcccacattcttactgtgggg
attggttccaaactctacatgtacggcctgctctctggcaaacctcctgaactgggcctg
cctgagggccccagggagcagagctcttcccgcctggtcctcctgcgctccgtggacctg
gtctcctccgtggaaggctccctgcccatccccgtctccctgtcctgggtgagagacggc
atcctggtggtgggcatggactgtgagatgcacgtgtactcccagtggcagcccccggcc
ccggccaagtccacggcctcgaataccaccaccacagacatgggcagcgtgtcatccctc
ctggctgcaatgaaacagagccatgaggagggcctgaaccctgctcctcccaagaagagc
ttgaccaggtccatgaccagcctggcccagaagctgagtgggaagaggacggtgtacgac
ctgcctgcggagatggaggactacgggctgtttgaggcggcacaccacctgttccccaca
ctgccccagtaccacccggtacagctgctggagctcatggacctggggaaggttcggcgt
gccaaggccatcctctcccacctcgtcaaatgcattgccggggagattgtggccctcaaa
gacaacggcaccaaccaagacaagcgtttccgctcgcgcaccatcagcgccggcggcagc
acctccagagaccccaagctcttcagcaagggcgagagctcggactacacagagattgac
tccatccctcccctgcccctgtacgcgctgctggcggccgacgaggactgctcccccaag
cccaaggacaaggtgtccagcttgagtggagacagtggccacgggtccagtcagacggac
gcctacgatgagctcttccagagcagtggggtgggtgtggacgacctggagcatatggac
agcgaccaggaggatggcggtgctaaggtcatagacctgtctcaatatagccccaccttc
tttgggccagagcacgcccaggttctgtccagccacctgctccactccagcctgccgggc
ctgacccgcatggagcagatgtccctcatggccctggctgacaccatcgccaccacaagc
actgacatccgggagagccagagcaggggtaaaggtggagagactttggatgagtgcggt
ctgaagttcctgttggctgtgaggctccatacgttcctgctgactaccctgcctcctgcc
catcgcgcccagctccttcgccaaggtctgtccacctgtcactacgcctgggctttccac
tccgaggctgaggacgagctgctccacatgttacctgccttgcagaaaggagaccccacc
tggcccgagctccgcgccatgggcatgggctggtggctcaggagcaccaataaactccgg
aggtgtattgaaaaagtcgcaaaagcgtcttttcaaaggcagaacgatcctctggacgcc
gccatcttctatctcgctatgaaaaagaaagcggtggtctggggactgtacaggtctcag
aagaatgccaaaatgactacgttcttcagcaacaactttggtgaggaaaggtggaggagg
gctgccttgaagaacgccttctctctgctggggaagcagcgcttccagcactctgcagcc
ttctttcttttggcaggctccctcaaggacgctgtagaggtttgcctggagaagatgcag
gacctgcagctggccctggtgatctcccggctctatgagtccgagtttgagacgtcctcc
acctacaaacgcatcctgcagaggcacgtgctgggccaagaccgccagctccccgcccac
caggaccccttcctgcgcagcacggcctactgggtactagaggactacagccgggccctg
gatactctgctggagcagcctgctgccccaaacctagcgtcctccactcaggctggccac
acaactcaaccaggtacctcgtccacgtccatctgtagcccggaggtcttcaacttctac
acctacctccgcacacatcccttactgctgcgccgccattttggctcgtctgagaagacc
agggtgggtctgacagcggagggtcgcatggcaaactcaatcagcctggtggagaggagg
ctgttcttcaccgcagcctacgctcacctgcaggccggctgccccatgctggccctggag
gtcctctccaaaatgcccaaagtcgtcaaaagatccaagctccaccaggacgataccact
aaccccgacctgagcgagacgaaaaaggaacaggcgtcagatttggactggtctcagccc
gcgttgaacggcttcgagtctgtgtcagacagcttgtccaatagccaatcggactctgtg
ctgagttttgactggggtcagccctctgtgtcggttcaggatgaagccctggagttgaaa
tgggacagcgacaaggaggaggaagaggacgacgacccacagggcttggccatgaagagt
gccgacaacaccagtagcgtctttcaagacgccatctctccattgacggagacgctgctg
gacgagggtgacgtcctcatgccctctgaggacatcctggccgctcaactcaaattcagc
gcctgcctgaagatcctgaccacggagctgcggaccctgtccacgggttacgagctggac
ggggggaagctacgctaccagctgtgccagtggctggagagggaggtggtggccctgcag
aggtgctgcagctacaagccctgcctgccagagctggccctgggaatggcagggccaagt
ggagaggaggaggcccaggcccagcctggtgaggcccagcgcacccgcagacactggctc
cagagcaaccagcctctcctgcgcatgttcctcagctactgcagcttgcacggctcccac
ggaggaggcctggcctcggtgcgcatggaactcatcctgctgcttcaggagtcccaacag
gatgacagtgtccagtcagccgtcgccccctacctgcaccacgcctccattcctctcctg
ctggcctgcactgccagtgccaagacagtggtggccaaccccatcgtccatctgaccaac
ctcacccacgacatcctgcacaccatcaacgcactggactccccgccacacccagacatc
gtcaacaacgagatctatgtgatgcacacactggcagcctcgctgtccgcctgcatatac
cagtgtctctgcgatggccacaaccacagccatgtgaaccagttcactgggatagtgtac
cagagtatcctctccttccagcaccacccggtacgcactgtgagcatggaggagactgta
ctgcccaacacccacccagcacagtggccaggtatcagtaccctgatccgcctgttgaac
tctgctggtgaggagagccagccaggcctggccgtgttactgtgtgagatcctgacggcc
gtcttcctcagcctgtttgtgcacggcctggccacccactccagcaacgagctgttccgc
atcgtggcccaccctctcaacagcaagctgtgggtggctgtgttcggagggggggcgcgt
acccccatcacagagaagcccagtcaggccaagtcacctccagcagccagtgaggagttc
gataggaagcccaggcgcttcaagctgttgtcgtcgtcgacacgcagtgcctccagagag
gggccagagacccccagcccaaccagccctgtggtggagcaagagacctccatcttcaaa
gagcactttgtccccccggagctcagcatctgggactactttatcgcaaagcctttcctc
cctccgtcagagagcagggtggagtacgactcggaggagagccagggcagtcaggacgag
gatgatgatgatgatgaagacgagtttggagactttgaccccaactctcctagccgagaa
cattccaatcccaactcctacagttggtgtctgatgcgcctggccatggtccagctggtc
ctaggcaacctgaagtcattctaccccatggcaggacatgacctactagatctacctgtg
ggctctcctctgtgtcacgcggtgctgaagaccctccagcgctgggagcaggtgttgctg
aagaggctggaaatcttcggggggccgccctccaagtacatctccacacaccctctggac
gagacggctgcctcgggccccgccatcctcagacacaaagccctgtttgagccctccaac
acacctttcaggtccagtcaccactctgccctgcctgtgaagaggctgtggcagtacctg
gtcaaacaggaagaggtgcaggaaacgttcatccgcaatattttcaccaagaaacgagac
caaaacgagtcggttgaggaccacaatgaaaatgacaaatgttcagggatggaggagcct
agctgtaaccagagcgaggcagatctgggctacccaggaggcaaggcccggatcatccac
aaggactcggacatcattaccgccttcgccatcaacaaggctaatcggaactgcttagtc
atggcctccactcatgacatccaggagctggacgtgtcctccatcttggccactcagatt
ctgacgtggatcgacgacgataccgaggccgaggccaaaggtgatgactttctggtgatc
caggcccgggatgacttcaacaccctccacggcaccaccccctacacccacagcagccta
gggacgcccatcaacatgccctggctcgggggcctgcagacggggagaggcgctgccgtg
ctcatcaaaaggaacatcaacaacgtgagaaggatgacctcccacccaaccttgccttac
tacttaacaggagcacaggacggaagtgtccggatgtttgagtggggccactctcagcag
atcatctgcttccgaagtccaggcaattccagagtcacacggatacgattcaaccaccaa
ggaaacaagtttggtatcgttgacgctgacggagccctacgtctatggcagaccaatacg
actgggaacacccctaaaccctacctgacattgcagtgccataataagacggctcacgac
tttgtgttcgtgggctcatcctccctcatagccacagcagggctgtcaacagacaacagg
aatgtgtgtctttgggatacattggtgaatccaatgaacagtctagtgcacgcctttagt
tgtcatgagtcgggggccacggtgctgtcgctggcccccaggcagcagctgctgataaca
ggtggcaggaagggctggatcagcgtgctggagctcccccacaggcaccagcgccagagc
ttccaggcccacgactcccccgtcaaggcgctggctgtggaccccaccgaggacagcttc
atcagcggttctgccgagggcaacatcaaggtgtggagcctgtccacgcagtgcttactg
catcagttccccaacgagcacgctcgccagtccctgttccggaatctgggcacgggcgtg
atgcagatcgaggtgggcccggccaaccacatcttttcgtgtggggccgacggtaccatg
aagatgaggattctccctgaccgcttcagcgtcaacaatggcaacctgaagaacgacgtc
aagttcataatttag
DBGET
integrated database retrieval system
