Salvelinus namaycush (lake trout): 120045165
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Entry
120045165 CDS
T07522
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
120045165
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
snh03019
]
120045165
03036 Chromosome and associated proteins [BR:
snh03036
]
120045165
Messenger RNA biogenesis [BR:
snh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
120045165
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
120045165
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
120045165
NCBI-ProteinID:
XP_038846033
UniProt:
A0A8U0UB06
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All DBs
Position
Sna3:complement(27790767..27813918)
Genome browser
AA seq
1826 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTGFGATTGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGTASGTSTSLFGSTNTGGGGGL
FSQQSNAFGAAKPASFGTFGTSTASSGGLFGATNSNPFGGASASLFGASGFTQQAAQPGT
TVKFNPATGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPTNPMA
APTGGLFGAAAAATPSTGAAGLFGSSATNTGFSFGQAKTNFGTSTGGFGAATGSLFGQQQ
QPQQAQQAASLFKPFGQATTTPNTGFSFGNTSTMGQPQQTSTMGGLFGSTAASQAGGLFG
NTAQTTPATGFGTGTGLFGQTNTAFGNVGTQQSLFGNKTAGFGATTTSASSFGTGTGLFG
NKSALTLGTGTNPSNFGFGPTAAGGSLFGNKAAAGGLGTGLGAGFGAAVGTGQMSLFGNN
KALGSTLGTIGAFGPQGFSTGTSTLGFGAQQQPVALTDPNAAAAQQAVLQQQINALAYSP
FGDSPLFRNPLSDPKKKEERLKPTNPAAQKALTTPTHYKLTPRPATRVRPKALTSSGSSK
SQLFDGLDDDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDTDDLASPPEYPLNG
LSASVDEDDYVREVVEGGAEDDLEINKFYTKPSLQDTISELNAHRVGARGRNGLEVSSED
ISLGEDSIQEEREEEVQEVPPHPAGIVLCRVGYYTIPAMDELSKMVDENGVCVVENFTVG
RKGYGSVFFHGEVNVTGLNLDEIVHFRRKEVIVYPDDKNKPAEGEGLNRRAEVTLDGVWP
NDKTTCTQIKNPERLSEMNYEGRLENASRKQGARFLEYRPETGSWVFEVAHFSKYGLQDS
DEDEEVPLKVDPKKLKTATTLPPGLQQLPPSQQQVAPQAQSKAVLELLSRMSEVDSDMAD
ITQDAPGESMLEEEGESGMGEEKGSRLGTVTPTEHNPVSASSQIASSLGINPHTLQIMKA
SLFAEDDDGDMFLEQGGMKSSLDRASPRILLPGTQGRPSIGGLLQTRFSGAGLFPQLPDV
PFGGGLPGRLSMSRPSAVVPEPSRLSPWPSLGPSFLLPAPAAEATVRTVGARRLGGPVAP
ENSVTLGKGRLLMDAALFTGRSFRVGWGPGWTLVHCGDRLSGTGDKEQDQGDTGAGGFGF
LPKHAKSKQLSDSPFKVVIEQVVGLEPRDSEESQAVYQRPLEIGLKHSTISTEGACPFIQ
PQSGVAALHEYVEWITDLNQEAGAGDRVLAHWALVWTLCEALWGRLGTTEPGTSGYLQQL
ERRRSFSAWLSHSATQRIEQEVGLSQGGGHVEAIFSYLTGHRISDACRLAQKSGDHRLSL
LLSQAVGSQYGRELLALQLGDWNRMQTDSFLQEERLRIFALLAGKPVWQSTDCVVNVCSE
LDWKRCVAVHLWYMLPPTASIADALAKYEAAFQGSAEGQKYACAPLPPYLDQSDPLDMEE
EESKRPLYDICFHLLKLYSDRHYSLQELLDPLTVTWERLDYRLSWHLWSVLQALHYTHLS
PARQGLIHTSYAAQLESAGLWDMAIYVLLHISEDMLRERAVREMLQLHCPLLETEESAQK
ERFLTERLLIPEQWLHLAKATRARRETDRHREALHLYRAGHWNLCHRLVIQHLASDCIIN
DNHEYLLEFLEGLAVPERSAVIQDWDTAGRVYLDYIRVIQTLHAIQQMDSAGYKLERLHT
EVTSLCSRIELLPCSTAKDRLAQSDMAKRVANILRVVLSLQQGGEGGEIPLSQLAPHIGR
LPMPEDYALEELRSLTQSYLRQLIVS
NT seq
5481 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcatttggtgctcctttcgggggagggaccggaggatttggaacttca
tccacgtttggacaacaaaacactggctttggggcgacgacaggtggcttcggggcctca
gcatttggggcgaccaacaacactggaggactctttggggcgacgcaaaataagccagtg
gtgacagccaatcctcaacaaatccacactggtgcaggtagaggaggtggcctgtttggt
tccagtacgttcagccagcccgtaacgtcgtccaccagtagcggctttgggtttggcacg
gccagcggcacatccactagcctgttcggcagcaccaacacgggcggcggcggaggactc
ttctcccagcagagcaatgctttcggagccgccaaaccagcctcctttggcacgtttggc
acgagcacggccagcagcggggggctgtttggggcgaccaactccaaccccttcggaggg
gcgtctgcctccctgttcggagcttcagggttcacccagcaagccgctcagccaggcacc
actgtcaagttcaaccctgcaacaggaagtgacaccatggtgaaagggggtgtgaccacg
agcattaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggttggaggactaccaggcaggaaggaagggccccactaaccccatggct
gcaccgacggggggtctctttggggctgcggccgcagccacccccagtacgggggctgca
gggctgtttggctcctcggccaccaacacaggcttctccttcggccaggccaaaaccaac
ttcggcaccagtacgggtgggtttggtgcagccacaggcagtctgtttggccagcagcaa
cagccccagcaggcccagcaggcagccagcctgttcaagcccttcggtcaggccacaacc
acacccaacacaggattctccttcggcaacaccagcaccatgggccagccccaacaaacc
agcaccatggggggtctgtttgggagcaccgcggcgtcccaggcaggggggttgtttgga
aacacagctcagaccacaccagccactggctttgggacaggcaccgggctcttcggacaa
accaacaccgccttcgggaacgtcggcacacagcagagcttgtttggtaataagacggca
gggtttggcgccaccaccaccagcgcgtcgtcgtttggcacaggcaccggcctcttcggc
aacaaatccgccctcaccctcggaacaggcaccaacccatctaacttcggttttggaccc
actgctgctggcggaagcctctttgggaacaaggcggcagcaggaggactggggaccgga
ctgggagccggctttggagcagcggtgggcactgggcagatgtctctgtttgggaataac
aaggcactgggttccactctgggaacaataggagcgttcggaccgcagggattcagcaca
ggaaccagcactctgggcttcggagcacaacaacagcctgtcgcgctgacggaccctaac
gcggcggcggcccagcaggcagtgctgcagcagcagatcaatgctctggcctactccccc
tttggtgactcccccctcttcagaaaccccctctctgaccccaagaagaaggaggagcgt
ctaaagcccaccaatccggcggcccagaaggcgttgaccacgcccactcactacaagctg
acgccgcggcctgcgacacgtgtgcggcccaaagctctgacatcttcgggctcctccaag
tctcagctgtttgacgggctggatgacgacgagccttctctcaccaatggagccttcatg
cccaggaagagcatcaagaagctggtgctgaagaacctgaatggcagcagcctgtacagc
agcccaatcaacagagacacagatgacctggcctctccaccggagtaccccctcaacgga
ctcagtgccagtgtggacgaggatgattatgtgagggaggtggtggagggaggggccgag
gatgacctggagatcaacaagttctacaccaagcccagcctgcaggacaccatctcagag
ctcaacgcccatagggtgggggccaggggcaggaatggcctggaggtgagcagcgaggac
atatcgctgggggaggactccatacaggaggagcgagaggaggaggtgcaggaggttccc
ccacatcctgcaggtatcgttctgtgccgtgtgggctactataccatccccgccatggac
gagctgtccaagatggtggacgagaacggcgtgtgtgtggtggagaacttcaccgtgggc
agaaaaggttacggctcagtgtttttccatggcgaggtgaatgtgactgggctgaacctg
gatgagattgttcacttcagacgcaaagaggtcatcgtctaccccgacgacaagaacaag
cctgctgagggggaggggctcaacaggcgagcggaggtgactctggatggggtgtggcct
aatgataagaccacttgtactcagataaagaaccctgagcgtctgtctgagatgaactac
gagggccgcctggagaacgcctcacgcaaacagggcgcccgcttccttgagtaccgcccc
gagaccggctcctgggtgtttgaagtggcccacttctctaagtacggcctgcaggactct
gacgaggatgaggaagtgcctctcaaagtggaccccaagaagctgaagacggccacaaca
cttcccccggggctgcagcagcttcctccctcccagcagcaggtggcgccacaggctcag
tccaaggctgtgctggagctgctgagtcgcatgtctgaggtggacagtgacatggccgac
attacccaggatgccccaggggagagcatgttggaagaggagggggagagcggcatgggg
gaggagaagggcagtcggctggggactgtgacccccacagaacacaaccctgtctctgca
tccagtcagatcgcctcctcgctgggaatcaaccctcacactctccagatcatgaaggca
tctctgtttgctgaggatgatgatggtgacatgttcctggagcagggaggaatgaagagc
tctctagacagggcctcccctcgcatcctcctgcctggcacccagggcaggccctccatc
ggtggtctcctgcagactcgtttcagcggggcaggtctcttccctcagctccctgacgtg
ccctttggagggggccttcccgggaggctgtccatgtctcggccgtccgcggtggttcct
gagccctcgcggctctccccctggccctcgctggggccctcattcctgctgccggcccca
gcggcagaggccactgtacggacggtgggggctcgacgcctggggggccctgtggcccca
gagaactcagtcacactggggaagggccgtctgctgatggatgcagctctgttcacgggc
cggtcgttccgggttggctggggtccaggctggactctggtccactgtggagacaggctg
agtgggactggggacaaggagcaggaccagggagacacaggagctggaggttttggattt
ctgcctaaacatgccaagagcaaacaactctcagacagtccgttcaaggtggtgatcgag
caggtggttggtctggagccgcgggacagtgaggagagccaggcggtgtaccagcggccc
ctggagatcggcctgaagcacagcaccatcagtacagagggggcctgccccttcatccag
ccccagagtggggtggccgccttgcacgagtacgtggagtggatcactgacctcaaccag
gaggctggtgccggagacagggtcctggctcactgggctctggtgtggactctgtgtgag
gccttgtggggtcggctgggtacgacagagcctggtaccagcggctacctgcagcagctg
gagaggaggaggagcttctcagcctggctgtcccacagcgcaacccagaggatcgagcaa
gaggtgggcctgagccaggggggaggacatgtggaggccatcttcagctacctcactgga
caccgcatcagtgacgcctgcaggctggctcagaagagtggggaccaccgcctctccctg
ctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcgctgcagcttgga
gactggaacagaatgcaaacggactcattcctgcaggaggagaggctacgcatcttcgcc
ctgctcgccgggaaacctgtgtggcagtctacagactgtgtggtgaacgtgtgttcagag
ctggactggaagcgttgtgtggcggtccacctgtggtacatgctgcctcccaccgcctcc
atcgctgacgccctggccaagtacgaagccgccttccagggctctgcagagggtcagaag
tacgcctgcgcccccctgccaccctacctcgaccaatcagacccgctggacatggaggaa
gaagagtctaaacggccactctacgacatctgtttccacctgctcaaactatacagcgac
agacactacagcctgcaggagttgttggacccgctgacggtgacgtgggagcgtctggac
taccgtctgagctggcacctgtggtcggtcctgcaggcgctgcactacacacacctgagc
cccgcccgacagggcctcatacacaccagctacgctgcccagctggagagcgctggcctc
tgggacatggcaatctatgtactgctgcacatatctgaggacatgctccgtgagcgtgcg
gtgagggagatgctccagctccactgccctctgctggagacggaggagtctgcccagaaa
gagcgcttcctcacagaaagattactgatcccagaacagtggctccacctggccaaagct
actagagccagaagagagacagacagacacagagaggccctgcacctatacagagcaggc
cactggaacctctgccacaggctggtcatacaacacctagcctcagactgtatcattaat
gataaccatgagtacctgttggagttcttggaggggctggctgttccagagcgcagtgct
gtgatccaggactgggacacggcaggcagagtctacctggactacatcagagtcatacag
accttacacgccatacaacagatggacagtgctggctataagctggaacgtctacacacc
gaggtgacatcactctgcagcaggatagagctcctcccctgctccaccgccaaggaccgt
ctcgcccaatcagatatggccaagcgcgtggctaacatcctgcgtgtggtgttgagtctg
cagcagggtggtgagggtggcgagatccccttgtcccagctagcgccccacatcggccgt
ctgcccatgcctgaggactatgccctcgaggagctccgcagcctcacccaatcatacctg
agacagctcatcgtcagctaa
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