Salvelinus namaycush (lake trout): 120045331
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Entry
120045331 CDS
T07522
Name
(RefSeq) integrin beta-4-like
KO
K06525
integrin beta 4
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04382
Cornified envelope formation
snh04510
Focal adhesion
snh04512
ECM-receptor interaction
snh04518
Integrin signaling
snh04810
Regulation of actin cytoskeleton
snh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120045331
04518 Integrin signaling
120045331
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120045331
09142 Cell motility
04820 Cytoskeleton in muscle cells
120045331
04810 Regulation of actin cytoskeleton
120045331
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120045331
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
snh04147
]
120045331
04515 Cell adhesion molecules [BR:
snh04515
]
120045331
04090 CD molecules [BR:
snh04090
]
120045331
Exosome [BR:
snh04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
120045331
Exosomal proteins of bladder cancer cells
120045331
Cell adhesion molecules [BR:
snh04515
]
Integrins
Integrin beta subunits
120045331
CD molecules [BR:
snh04090
]
Proteins
120045331
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
Integrin_B_tail
Pur_ac_phosph_N
EGF_Teneurin
PSI_integrin
FN3_DSCAM-DSCAML_C
I-EGF_1
EGF_integrin
EGF_2
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
120045331
NCBI-ProteinID:
XP_038846141
UniProt:
A0A8U0QP58
LinkDB
All DBs
Position
4:6497640..6527385
Genome browser
AA seq
1913 aa
AA seq
DB search
MGRWTLHLLVGVVLAVLTASSYAEKVNHCLAARANTCSACIQSGKGCAYCPDEMFDGPRC
DLLENIIDHGCNGAVTAESSVSMEKNQKIDMLMKRSQVAPQDMSMTLLPGEEREIEMEVF
EPAKGPLDLYILMDFSNSMKDDLDNLKRMGAELADLVGKLSDDYTIGFGKFVDKVVEPQT
DMRPTKLAQPWPNSDPPFSFRNVITLTSDLQSFTEKLQKERISGNLDAPEGGFDAILQAT
VCGEKIGWRDHATHLLVFSTESAFHYESDGANVLAGIMPRNDEQCHLDPDGKYTEDTRQD
YPSVPTLVRLLGKHNIIPIFAVTNHSFTYYEKLHEYFPIAELGLLQEDSANILNIMEKAF
ENIRSKISIRAEDRPKAIEAQVLSYSGSVAQAGTFKVKPGQIGKFKVRVKASEMVGEQHV
CSLEQGDKKGKMRVKPTTFSTALNINAEVLCKTCDCEKNPFPNAVRCTGHGDLVCGKCKC
NDGWLGPFCNCSASASTDSGTSCRGPGVEEPCSGRGDCLCGTCVCYNTDQYEGPLCQFDK
SQCQRYGGFLCNDRGRCFMGQCACAEGWEGPACECPMSNQTCLDTKGGICNGRGVCKCGR
CECQDSGLAMTPTCEANFQAQLGMCEDKRSCVQCQAWKTGEKKDSDKCDQCQFKVVMVEE
LRENKEVIEACSFRDEDDDCTYHYTVDYPEDQTVKELEVQVLKKKDCPPAGFLWLIPLIM
FLMLLLGLLSLCCWKYCACCKSCLALLPCCGRGRTVGFKENQYMLRQSMLTSDHLDTPLV
RTGPPKSTDVVRWKITDNVHRSPNNPLAQVQPNPKETIQFPLSLRLNRLFTDSLSRSDAR
DTELLRREVDDNLNEVYKQVPGTQRVQNTTFRLQRNAGKRADHAIVDTVLSAPRSSYPNI
VKLTEKNVQSGNFQDLKVVPGYYTVATDREAAGAVEFQEGVEMVDVHVPLFVKEEDDDKK
QLQVEAVDVPLGIAEIGKRFVSITIIKEHAKSVMSFLQPSYTYSRQDKVANIPITREIIE
DGHAQVSYRTRDLTAKDKKDYVTVDGELSYGPGETQQTVPVRLLEMGEGDGLLKDTQVKQ
FVMDLSNPRQGAKLGRYPRTTVTITDKPEPSVVMFMKSTQNFSTADPTYSIPVVRTRNKE
GPATVHWRTRNAKRFELSGPLKFGPGETDKNIVIDPRSHPGPVKPESFQLELFDPSTKAV
VGERKTTMVTITDGGLPDNAQMEKSAGFINQTATSPGGRLNSPTNVKAKATGPRSIRLNW
DPVGKSLGYKVKHWIYGDPEADAPPAMNVKTTHADLANLYPYCDYETKVCGYNALGDGNY
SDMVPCKTLEDVPSEPGRLAFNVISPTVTQVSWAEPAETNGVITAYEVLYTPINDDTKPM
GAAKKVKIDNPKKRMLLIENLQSAQTYCYQVRAKNSVGWGPFKEATINLASQPTRPMSIP
IIPDIPIVDAEAGDEYDGYLMYSSEVMRSPTDSKRPSVSDEEPMNGRLEQNFLFPGGNNS
MSRNMSSSSYSQVSPMSTLSSSHRGGAGGSMSMESTTTYLSGQGGNSLSRTQVIGGGTRT
ENVVMRKRSENRGYYEYDDNIRDSIIIGDLSSGLSGYTDGQNARLAPGVPDTPTRLVFSA
LGPTALKISWQEPHCERDVLGYCVLYQLLNGGDVKRINMSSPADNSVVVQDLLPNHSYLF
KVKAQSQEGWGPEREGVITIESAVDPNSPLSPMPGSPFTLSTPSAPGPLVFTALSPEALQ
LSWEKPRKPNGDILGYVVTCEHLHGGGDMRSFQVSGDSAETSLTVPDLSENMPYKFKVQA
RTTQGFGPEREGIITIESQDDGGTSQYSSQSLTKRDVYQLPTEGSTHTNVTHTMINDPYY
SGDGMMMVGKTTQHTETSGMVTRHVTKEVVQRSMQVAGTSSVTKKVERSFYET
NT seq
5742 nt
NT seq
+upstream
nt +downstream
nt
atggggagatggacgttacatctcttggtgggggttgtacttgctgtcctcacggccagt
agctacgctgaaaaagtaaaccactgtctggctgcaagggctaacacctgttcagcatgc
atccagtcagggaagggctgtgcctactgcccagacgagatgtttgatggaccccgctgt
gaccttctggagaacatcatagaccacggctgtaatggcgcggtgacggccgaaagcagt
gtgtcaatggagaaaaaccagaagattgacatgttgatgaagcgctctcaggtggccccc
caggatatgtccatgactctgctgccaggggaggagagggagattgagatggaggtgttt
gaaccagcgaaaggacctctggacctctatattctcatggacttctccaactccatgaag
gatgatttggacaacctcaaaaggatgggtgctgagctggctgacttggtggggaagctg
tctgatgattacaccatcggtttcggcaaatttgtggacaaggtggtggagccccagaca
gacatgagaccgaccaaactggcccagccgtggcccaacagcgaccctcccttctcgttc
cgaaatgtgatcactctgacctctgatctgcagtccttcaccgagaagctgcagaaggag
aggatctcaggcaacctggatgctccagaggggggcttcgacgccatactgcaggctaca
gtctgcggggaaaagattggctggcgtgaccatgccacccacctcctggtcttctccacc
gagtcggccttccactacgagagtgacggtgccaacgtgctggctggcatcatgccacgc
aatgacgagcagtgccacctggaccccgatgggaaatacacagaggacaccaggcaggac
tacccctctgtgcccaccctggtccgcctgctgggcaaacacaacatcatccccatcttt
gccgtcacaaaccactccttcacctactatgagaagcttcatgagtatttccccatcgct
gagctgggcctgctccaggaagactctgctaacatcctcaatatcatggagaaagctttc
gagaatatccgttctaagatcagcatccgtgctgaggacagacctaaagctatagaagct
caggtcctgtcttacagtggcagtgttgcacaagccggaaccttcaaagtcaagcctggg
caaatagggaagtttaaggtgcgtgtcaaggccagtgagatggttggggagcaacatgtg
tgtagtctggagcagggtgacaagaaggggaagatgagagtcaaaccgaccaccttcagc
acagctctaaacatcaacgctgaagtgctctgtaaaacctgcgactgtgagaagaatcca
tttccaaatgcagtgaggtgtacaggccacggagacctggtctgtgggaagtgcaagtgc
aacgacggctggttgggtccgttctgtaactgctctgccagcgcgtctacggattcgggc
acttcctgtcggggtcctggagtggaggagccgtgttctggccgaggagattgcctgtgt
ggaacgtgtgtttgttacaacacggaccagtacgagggacccctctgtcagtttgacaag
tcccagtgtcaacgatacggaggtttcctctgcaacgaccgtggtcgctgcttcatgggc
cagtgtgcgtgtgcagagggctgggagggaccggcctgtgagtgtcccatgagcaaccag
acctgtctggacactaaagggggcatctgtaacgggcggggtgtgtgtaagtgtggtcgt
tgtgagtgccaggactctggcctggccatgacccccacctgcgaggctaacttccaggcc
cagctagggatgtgtgaggacaagaggagctgtgtccagtgtcaggcctggaagaccgga
gagaagaaggacagcgacaagtgcgaccagtgccagttcaaagtggtcatggtggaagag
ctcagggaaaataaagaggtgattgaggcgtgtagtttccgtgacgaggatgatgactgt
acgtaccactacaccgtggactatcccgaggaccagactgttaaggaactggaggtccag
gtgctcaagaagaaagactgtccccctgctggcttcctgtggttgatccctctcatcatg
ttcctcatgctactgctgggtctattgtcgctctgctgttggaagtactgcgcctgctgc
aagtcttgtcttgctttgctgccatgctgtggaagaggtcgtacggttggctttaaggaa
aatcagtacatgctccgccaatccatgctcacctctgaccacctagacacgcccctagtg
aggaccggcccacccaagagcaccgacgtggttcgttggaagatcactgacaatgtccac
cgatcgcccaataatccgcttgcgcaggttcagcccaaccccaaagagacaatccagttc
cctctgtctctgcgtctgaacaggttgttcacagacagtctgtctcgctccgacgccaga
gacactgagttgctacgcagggaggttgatgacaacctgaatgaagtgtacaagcaggtt
cctggcacccagagagttcagaacaccacatttagattacagagaaatgctggtaaaaga
gctgaccacgccatcgtagacaccgttctgtccgctcctcgatccagctaccccaacatc
gtcaaactgactgagaaaaacgtccagtctggaaacttccaggatctcaaagtggtgccg
ggctactacacagtggccacagacagagaggcggctggtgccgtggagttccaggagggg
gtagagatggtggatgtgcacgtgccgctcttcgtcaaggaggaagatgatgataagaag
cagctgcaagtggaggcggtggacgttcctctgggcatcgctgagattgggaaacgcttc
gtcagcatcactatcatcaaagaacacgccaagagtgttatgtcgttcctccagccttcg
tacacctacagccgacaggacaaagtggctaacatccccattactagagagatcatagag
gatggacacgcacaggtcagctaccgcacccgagacctcaccgccaaggacaagaaggac
tatgtgacagtagatggggaactgtcctacgggccaggggagacccagcagactgtccct
gttcgtttgttggagatgggagagggagacggtctgctgaaggacacacaggtcaaacaa
tttgtcatggacctcagtaacccaagacagggtgcaaagctgggacgctaccccagaacc
accgtcaccatcactgacaaaccagagcccagtgtggtgatgtttatgaagagcacccag
aacttctccaccgccgacccaacctactccatccccgtggtccgcacccgcaataaggag
gggcccgccaccgtccactggaggacccgcaacgctaaacgcttcgagctgtccggcccc
ctaaagtttggtcccggggaaacagataagaacatcgtgatcgatccacgctctcaccct
ggcccggtgaaaccagagtccttccaactggaactgtttgaccccagtacgaaagctgtg
gtcggagagaggaagacgacgatggtcactattactgatggaggacttccagacaatgcc
cagatggagaagagtgcgggcttcatcaaccagacagccacgtctcctggtggtcgtctc
aactctcccaccaacgtgaaggccaaagccaccggcccccggagcatccgcctgaactgg
gatcccgtaggaaaatccctgggctacaaggtgaagcattggatctatggggatcctgag
gctgacgccccccctgcgatgaatgtgaagacaacccatgctgatctggccaacctgtac
ccctattgtgactacgagacgaaggtgtgtggctacaacgccctgggagacggaaactac
agcgacatggtgccctgtaagaccctggaggatgtccccagtgagcccggtcgtctggcg
tttaacgtcatcagtccaactgtcactcaggtcagctgggcggagcctgccgagaccaat
ggtgtcatcaccgcctacgaggtcctctacacgcccatcaatgacgacacgaagccgatg
ggtgcagctaagaaggtgaagatagacaaccctaagaagaggatgttgctgattgagaac
ctgcagtcggcccagacttactgctatcaggtccgggctaagaacagcgtgggttggggt
cccttcaaagaagcgaccatcaacctggcctcccagcccaccagacccatgtccatccct
atcatcccagacatccctatagtggacgcggaggcgggtgatgagtacgacggctacctg
atgtacagcagtgaggtcatgagatcgccaacagactccaagagacccagcgtctcagac
gaagaaccaatgaacggcaggttggaacagaacttcctcttccccgggggaaataattcc
atgtcgcgcaacatgtcttcatccagctacagccaggtgtctcccatgtccaccctcagc
tccagccaccgagggggggccggggggtccatgtccatggagtccaccacaacatacctc
tctggacaaggaggaaactctctctcccgcactcaggtgattgggggcgggacgcgcacg
gagaatgttgtcatgaggaaacgatcagagaacagaggttactatgagtatgatgacaac
atccgagattccatcatcataggagacctgtccagtggattgtctggatacacagatggc
caaaacgctcgtttggcccctggggtccctgacacccccaccaggctggtgttctctgcc
ctgggccccactgccctgaagatcagctggcaggagccccactgtgagagggatgtttta
gggtactgtgttctctaccagcttctcaatggaggtgatgtgaagcgtataaacatgtcc
agccccgcagacaactccgtggtggtgcaggacctgctgcctaaccactcctacctgttc
aaggtgaaggctcagagtcaggaaggctggggaccggagagggagggagtcatcaccata
gagtcagctgtcgaccccaacagcccactcagcccaatgccaggttctcccttcactctc
agtacccccagtgctccaggccccctggtattcacagctctgtcccccgaggcactgcag
ctgagctgggagaaaccccgcaaacccaacggagacatcctgggctacgtggtcacctgt
gaacatctgcacggaggaggtgacatgcgttccttccaggtgagcggtgacagcgctgag
accagtctgacagttccggacctgagtgagaacatgccgtacaagttcaaagttcaggcc
aggacgacccagggcttcggccccgagagggagggcattatcaccatcgagtctcaggat
gacggcggtacgtctcagtacagcagtcagtccttgaccaagagagatgtgtaccaactt
cctacagagggcagcacacacaccaacgtcacacacaccatgatcaacgacccatactac
tcaggagatggtatgatgatggtggggaagacgacccagcacacagagaccagcggcatg
gtgactcgtcatgtgacgaaggaggtggtgcagaggagcatgcaagtggccggcaccagc
agcgtcaccaagaaggtcgagaggtcattctacgagacctga
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