Salvelinus namaycush (lake trout): 120046057
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Entry
120046057 CDS
T07522
Symbol
capn1a
Name
(RefSeq) calpain 1, (mu/I) large subunit a
KO
K01367
calpain-1 [EC:
3.4.22.52
]
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04141
Protein processing in endoplasmic reticulum
snh04210
Apoptosis
snh04217
Necroptosis
snh04218
Cellular senescence
snh04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120046057 (capn1a)
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
120046057 (capn1a)
04217 Necroptosis
120046057 (capn1a)
04218 Cellular senescence
120046057 (capn1a)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
120046057 (capn1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
snh01002
]
120046057 (capn1a)
Enzymes [BR:
snh01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.22 Cysteine endopeptidases
3.4.22.52 calpain-1
120046057 (capn1a)
Peptidases and inhibitors [BR:
snh01002
]
Cysteine peptidases
Family C2: calpain family
120046057 (capn1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C2
Calpain_III
EF-hand_6
EF-hand_1
EF-hand_7
CAPN13-like_C_EFh
Motif
Other DBs
NCBI-GeneID:
120046057
NCBI-ProteinID:
XP_038846902
UniProt:
A0A8U0QNZ7
LinkDB
All DBs
Position
Sna4:2524031..2576170
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AA seq
698 aa
AA seq
DB search
MSGGISASIATSRLQAEGMGSNDHAVPFLNQDYEALRQECLETGCLFQDPYFLAEPPSLG
FKELAPFSAKTRDVEWMRPTELTDDPQFILGGATRTDICQGALGDCWLLAAIASLTLNER
LLHRVVPHGQSFQEGYAGIFHFQFWQFGEWVDVVIDDRLPTKDGEIMFVHSAEGNEFWSA
LLEKAYAKLNGSYEALSGGSTTEGFEDFTGGVSEMYELRKAPRDLYRIISKALDRGSLLG
CSIDITSAFDMESVTFKKLVKGHAYSVTGLKKVDYQSQVERLIRVRNPWGQVEWTGAWSD
NSPEWDELDPSEREDLHLKMEDGEFWMSFQEFLRQFSRLEICNLTADALSEDGLSHWNTI
KFHGMWRRGSTAGGCRNHPNTFWINPQYKITLLEEDDDPEDDEVACSFLVALMQKDRRRY
RKQGQDMHTIGFAIYEYRGCQNVHLKKDFFLTHSSCARSETFINLREVSNRLRLPPGEYL
IVPSTFESGQEADFVLRVFTEKQSETEELDDEIAADLEDEDDISEDDIEDSFKSMFAQLA
GEDMEISVRELRTILNRVVTRHEDLKTDGFSMESCRTMVNLMDKDGTARLGLVEFQMLWN
KIRKWLVIYREYDMDKSGSMSSYEMRLAVESAGFKLNNRLNQVLVARYAENEAIDFDNFI
CCLVKLEAMFRSFQQLDKEGEGVAELNITEWLYMTMCG
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtcagggggaatctctgctagcatagccaccagcagactgcaagctgagggaatgggc
tccaacgaccacgccgtacctttccttaaccaggactatgaggctttgaggcaggagtgt
ctggagacggggtgtctgttccaggacccctacttcctagccgagcctccctctctgggc
ttcaaggaactggcccccttctctgccaagaccagggatgtggaatggatgagacccacg
gagctgacagacgaccctcagttcatcctgggaggagctaccagaacagacatctgccag
ggagctctaggtgattgctggctcctagcagccatagcctctctaaccctcaatgagagg
ctgctccaccgagtggtcccacatggtcagtccttccaagagggctatgctgggatcttc
cactttcagttctggcagtttggtgagtgggtggacgtggtgattgacgaccggctgcca
acgaaggatggagagatcatgttcgttcactcagccgagggcaatgagttctggagcgcc
ctgctggagaaggcctacgccaagttgaatggttcctatgaggctctgtctggaggcagc
actacagaaggctttgaggacttcaccggcggtgtgtctgagatgtacgagctccgtaag
gctccacgggacctgtacaggatcatcagcaaagccctggacagaggctccttgctgggc
tgctccatcgacatcaccagtgcctttgacatggagtctgtgacgttcaagaagctggtg
aaaggtcatgcttactcagtcaccggcctaaagaaggtggactaccagagtcaggtggag
aggctgatcagggtgaggaacccctggggacaggtggagtggactggcgcctggagtgac
aattctcctgagtgggatgagttggacccatctgagagagaggacctgcatctaaagatg
gaggatggcgagttctggatgtcattccaggagttcctgaggcagttttcccgtctggag
atctgtaacctgacggcggacgctctgagtgaggacggcctcagccactggaacaccatc
aagttccacggcatgtggagacgggggagtaccgccgggggctgccgcaaccaccccaac
acgttctggatcaacccccagtataagatcactctgctagaggaggatgacgaccctgag
gatgacgaggtggcttgtagcttcctggtggctttgatgcagaaggacaggaggaggtac
cggaaacagggacaggacatgcacaccatcgggttcgccatctacgagtacaggggctgt
cagaacgtgcacctgaagaaagacttcttcctgacccactcatcctgcgctcgctctgag
accttcatcaacctgagagaggtcagcaaccgtctccgtttgcctccgggagaatatctc
atcgtcccctccaccttcgagtctggccaggaggctgactttgtcctgcgagtcttcact
gagaaacagtctgagacagaagagctagacgatgaaatcgcagcagacctggaagatgag
gatgacatcagtgaagatgacatcgaagactcattcaaatccatgtttgctcagctggca
ggagaggatatggagatttctgtccgtgagcttaggaccatcctgaacagagtagtgact
agacacgaagacctgaagacagacggtttcagtatggagtcctgtaggaccatggtcaac
ctcatggataaggatggcactgcccgtctcggcctggtagagttccagatgctctggaat
aagatcaggaagtggctggtcatctatagagaatatgacatggacaagtcgggatccatg
agctcctatgagatgcgacttgctgtggagtcggcaggttttaaactgaacaacagactg
aatcaggtcctagtggctcgctatgctgagaatgaggccatagactttgacaacttcatc
tgctgtctggtcaaactggaagccatgtttagatctttccagcagctagacaaagaggga
gaaggagtggctgagctgaacatcactgagtggctgtatatgaccatgtgtggttga
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