Salvelinus namaycush (lake trout): 120046244
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Entry
120046244 CDS
T07522
Name
(RefSeq) B-cadherin-like
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh04371
Apelin signaling pathway
snh04514
Cell adhesion molecules
snh04520
Adherens junction
snh05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
120046244
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
120046244
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
120046244
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
120046244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
snh03036
]
120046244
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
snh04515
]
120046244
04090 CD molecules [BR:
snh04090
]
120046244
Chromosome and associated proteins [BR:
snh03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
120046244
Cell adhesion molecules [BR:
snh04515
]
Cadherins
Major cadherins
120046244
CD molecules [BR:
snh04090
]
Proteins
120046244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Cadherin_4
Big_13
Motif
Other DBs
NCBI-GeneID:
120046244
NCBI-ProteinID:
XP_038847241
UniProt:
A0A8U0QMS0
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Position
Sna1:58706681..58724469
Genome browser
AA seq
886 aa
AA seq
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MYSKQMGAFWFVELGVLILFLQAVKPGSSESKCLPGFNSEIYIFKVERNHLQSGRRLGKV
VFDDCTSRTSFLFHSEDSRFKVDGDGTLKLKRGLTLHNGHKEFYVSTQSKGKKITVPVRV
LHEAGHGHHHNHHEMTTQPKPGASLSLPVLNFPKSSGGLKRRKRDWVIPPINFPENDRGP
FPKNMVQIRSNNDKEVKIQYSITGAGADLPPVGLFTVDKNSGTLYVTQPLDREKKDKYIL
LAHAVAVGAGTAEDPMEIIVKVIDMNDNKPVFTQNPFTGTVPEASKPDDEVMQVTATDAD
EEGSANSDVRYTIISQEPPLPSPNMFVINSVTGGIRVNAAGLDREKYSKYTLEIQAADME
GNGLTSFGKAIITVTDSNDNAPQFVTPSYTVSVPENKVDALVVKMPVTDGDEPHSSAWAT
TYKIVDGDPQGLFSVSTGPSKLEGIITTAKPLDFEKNNKYTLLVIVQNEVPFAISMPTST
ATVVVNVEDVNEAPVFTPVEKIIRKPEDLPVDSDLVLYPATDPDTARSQKVTYKIRNDPA
GWLSINKDTGLIKVKSLMDRESTFVQDNKYSVIVLGIDNDEIPATGTGTLIIELEDVNDN
APTIDESVIKVCNKESSPQLLSVTDKDSAGFAAPYTVQLQGSSQSNWTARMNDTKTGIIL
TLKTMLDSGDYTVVLRVSDIQGLHHDSTIQASVCDCKGADVQCTDKAVAGFGISSILGIL
GAVLLLLLLSLLLLMFLRKRGGEKKEPLLQEDDVRDNIYYYDEEGGGEDDQDFDLSVLHK
GLDNRPDVFRNDIAPTMARPEYRPRPANPADIGNFIDDNLKAADNDPTAPPYDSLLVFDY
EGGGSEAGSLSSLNSSNSGDDQDYDLLQEWGPRFKKLSDMYGGGED
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgtattcaaaacaaatgggggcattttggttcgtggagttgggcgtattaatattattt
ctccaggctgtcaaaccagggtcgtcggagtcaaaatgtctaccaggtttcaattcagaa
atatacattttcaaagtggaaagaaatcacttacaaagtggccggagactaggaaaagtg
gtttttgatgactgcaccagccgtaccagctttctctttcactccgaggattcacgcttc
aaagtagatggcgacgggacgctgaaactgaagagggggctgactctgcataatggacat
aaggagttctatgtctctacccagtccaagggcaagaagatcacagttccagtcagagtg
ctgcatgaggcaggacatggccaccaccacaatcaccatgagatgaccacccagcccaag
ccaggagcaagtctgtctctacctgttctgaacttccccaagtcttcaggaggtctgaaa
agaaggaagagggactgggtcattcctcccatcaacttcccagagaatgaccgaggcccg
ttccccaagaatatggtgcagatcaggtccaacaatgataaagaggtgaagatccagtac
agcatcactggcgctggggcagacctacctcctgtgggactcttcactgtggacaaaaac
tctggaactctctatgtgacccagcctttggacagggagaaaaaagacaaatacattctc
ctagcccatgctgttgcagtgggtgcaggtacagctgaggatcccatggagatcattgtg
aaagtcattgatatgaatgacaacaaacctgtatttacccaaaatccatttacgggaaca
gtccctgaggcttcaaaaccagatgatgaggtcatgcaggtaacggccactgatgctgat
gaggagggctctgccaattctgatgtcagatacaccattatcagtcaggagcctccacta
ccaagccccaacatgtttgtcatcaactctgtgaccggagggattcgggttaacgcagct
gggttggacagagagaaatattccaaatatactttggaaatccaagctgccgatatggag
ggaaatggccttaccagctttggcaaagccatcattacagtaacggacagcaatgacaac
gcgccacagtttgtgacgccttcgtacaccgtgtcagtcccagagaataaagtggatgcc
ttggtggtgaaaatgccagtgactgatggagatgagcctcactcctctgcctgggctacc
acctacaagatagttgacggggaccctcagggccttttcagtgtgagcacaggccctagc
aagctggagggcatcattacaacagctaagccacttgactttgagaagaacaacaagtac
actctgctggtcattgtgcagaatgaagtcccatttgcaatcagcatgcccacctccact
gctactgttgtagtgaatgtggaggatgtgaatgaagctccagtcttcaccccagtggag
aagattatcaggaaacctgaggacctccctgttgacagtgacctggttctgtacccagcc
acagacccagacactgcaaggagtcagaaagtcacatacaagatacgcaatgatcctgct
ggatggctaagtatcaacaaagacactgggctgatcaaagtcaagagcctcatggacaga
gaatccacttttgtccaagacaacaaatactctgttattgttctgggcatcgacaacgat
gaaatcccggcaactggcactggcacccttatcatagagctggaggatgtgaatgataat
gctccaaccatcgacgagagtgtgatcaaggtctgcaacaaggagtcctccccacagcta
ctgtcagtcactgataaagacagcgcgggctttgctgctccatacaccgtacagctgcag
gggtcgtcccaatctaactggactgccagaatgaacgacacaaagactggcattatcctg
actctgaagactatgttggacagtggagattacacggttgtcctgagagtgtctgacatc
cagggcctgcaccatgacagcaccatccaggcctccgtgtgtgactgcaaaggagcggat
gtccagtgcaccgataaagctgtagcaggcttcggcatctctagcattctgggaattcta
ggagcagtgttactactcctattgttgtctcttctgctgctcatgttcctgaggaagaga
ggtggtgagaagaaggagcctctgctgcaggaggacgatgtcagggacaacatctactac
tatgacgaggagggaggtggcgaggatgaccaggatttcgacttgagcgttctgcacaaa
ggtctggataaccgtcctgatgttttccgtaatgacatcgcgccaaccatggcccggcca
gagtatcgcccacgacccgccaacccagccgacataggcaacttcattgatgataacctg
aaggcagctgacaacgaccccactgctcctccctacgactccctcctggtgtttgactat
gaaggaggtggctctgaggccggctccctcagttccctcaactcctccaactcaggagac
gaccaggactacgacctccttcaagagtggggcccgcgcttcaagaagctgtctgacatg
tacggaggaggagaggattga
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