Salvelinus namaycush (lake trout): 120046341
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Entry
120046341 CDS
T07522
Symbol
ddx39ab
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab isoform X1
KO
K13182
ATP-dependent RNA helicase DDX39 [EC:
5.6.2.7
]
Organism
snh
Salvelinus namaycush (lake trout)
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
snh03041
]
120046341 (ddx39ab)
Enzymes [BR:
snh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
120046341 (ddx39ab)
Spliceosome [BR:
snh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
120046341 (ddx39ab)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
120046341
NCBI-ProteinID:
XP_038847425
UniProt:
A0A8U0QQE1
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All DBs
Position
Sna4:23165727..23171563
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AA seq
469 aa
AA seq
DB search
MAENDADNELLDYEEDEEPQGVPETAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYSKALSILIHAASHGGFSTQTDITCYSCKLSHSYVFLSLSAGNCLIQC
NT seq
1410 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaacgatgctgacaatgaactgctggactatgaagaggatgaggagcctcag
ggagtcccagagacggctgccccagcaggcaagaaggaggtgaagggctcctatgtctcc
atccacagttctggcttcagggacttcctgctcaaaccagagctgctccgtgcgattgtc
gactgtggctttgagcatccgtctgaagttcaacatgagtgcatccctcaggccatcctg
ggaatggacatcctgtgccaggctaagtctggtatgggcaagacggcagtgtttgttctt
gccacactacagcagatcgagcctgtggatggacaggtgtcagttctagtaatgtgccac
acacgagagctggccttccagatcagcaaagagtacgagcgcttctccaagtacatgccc
acggtcaaggcagccgtgttcttcgggggcctgtctatcaagaaggatgaggatgtgctg
aagaagaactgccctcacattgtggtgggaacccctggccgcatcctggccctcatccgc
aacaagaccctgaacctaaagaacgtcaagcactttgtcctggatgagtgtgacaagatg
ctggagcagttggacatgaggcgtgacgtacaggacatcttcaggctaactccacatgag
aagcagtgcatgatgttcagcgccaccctcagcaaggagattcgaccggtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtagatgatgagaccaagctgacgctgcacggt
ctgcagcagtactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctg
cttgatgtgctggagttcaaccaggtggtgatctttgtcaagtcagtgcagcgctgtgtg
gcgctttctcagctactggtggaacagaacttccctgccattgccatccacaggggcatg
gctcaggaggagaggctgtcccggtaccagcagttcaaggacttccaaaggcggatcttg
gtagccaccaacctgtttggtcgagggatggatatcgagcgggtcaatattgtcttcaat
tacgacatgcctgaggactcagacacatacttacacagggtggctcgtgctgggcggttt
ggaaccaagggtctggctgtgacctttgtgtcagacgagaccgatgccaagactttgaat
gacgtgcaggaccgctttgaggtcaatgtggccgagctgccagaagagatcgacatttcc
acttacagtaaggctctctccatccttatacatgcagcctcccatggaggtttctccact
caaacggacattacttgttattcttgtaagttgagtcatagttatgtctttctgtcactg
tctgctggcaattgtttaattcaatgttaa
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integrated database retrieval system
