Salvelinus namaycush (lake trout): 120046402
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Entry
120046402 CDS
T07522
Name
(RefSeq) UV excision repair protein RAD23 homolog A-like isoform X1
KO
K10839
UV excision repair protein RAD23
Organism
snh
Salvelinus namaycush (lake trout)
Pathway
snh03420
Nucleotide excision repair
snh04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
snh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120046402
09124 Replication and repair
03420 Nucleotide excision repair
120046402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03051 Proteasome [BR:
snh03051
]
120046402
03400 DNA repair and recombination proteins [BR:
snh03400
]
120046402
Proteasome [BR:
snh03051
]
Eukaryotic proteasome
Proteasome interacting proteins (PIPs)
UBL-UBA shuttle proteins
120046402
DNA repair and recombination proteins [BR:
snh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
XPC-HR23B-CETN2 complex
120046402
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UBA
XPC-binding
ubiquitin
UBA_7
Rad60-SLD
Rad60-SLD_2
UBA_3
Crinkler
Dsc3_N
OTU1_UBXL
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
120046402
NCBI-ProteinID:
XP_038847531
UniProt:
A0A8U0UD56
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Position
Sna4:complement(26789067..26797358)
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AA seq
353 aa
AA seq
DB search
MQITLKTLQQQTIQIDIDPDQTVKALKEKIEAERGKDNFPVSGQKLIYAGKILQDDTPIK
DYKIDEKNFVVVMVSKAKSAIVASTPSSEAPKAPVQDSGSSAGPAPAAIPIPSEEPTPTV
AEPPAPASSDPSVEVQGGDASSALVTGAEYETMLTEIMSMGYERERVVAALRASFNNPHR
AVEYLLTGIPSSPVQETNPPAQLPASARTGTETPTVAEGENPLEFLRSQPQFQSMRQVIQ
QNPSLLPALLQQLGRENPQLLQQISQYQELFIQMLNEPAGEVGDVPEVGDLGAAVEEGAP
VNYIQVTPQEKEAIERLKALGFPEALVIQAYFACEKNENLAANFLLNQGFEDE
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatcacgctaaaaacactgcaacagcagaccattcaaattgacatagaccctgat
caaacggtgaaggcactgaaagagaagatcgaagcagagaggggaaaagataacttccca
gtgtctggacagaagctcatatatgctggcaaaatcctgcaagatgacacacctattaaa
gactacaaaattgacgagaagaatttcgttgtagttatggtatcgaaggcaaagtctgcc
atagttgcttcaacaccttcctcagaggcacccaaggcccctgtccaggactctggatcg
tctgcgggcccggcccctgcagccatccctatcccctcagaggagcccacacctacagtc
gcagagcccccagctccagccagctccgaccccagtgtggaggtccaggggggagatgcc
tcctctgccttggtgacaggagcggagtatgagaccatgctgacagagataatgtctatg
ggttatgagagggagagagtggtagctgctctccgggccagcttcaacaacccccatcgg
gctgtggagtacctcctcactggcattcctagcagtccggtccaagagactaatccccca
gcacagcttcctgcatctgcccgcacaggcacagagacccctactgtagctgagggagaa
aaccctctggagttcctgcgttcccagcctcagttccagagcatgaggcaggtgatccag
cagaacccctcactgctgccagctctactccaacagctgggccgggagaacccacagctc
ctacagcaaatcagccagtaccaggagctgttcatccagatgctgaatgagccggcgggg
gaggtaggagacgtgcctgaggtgggggacctgggtgctgcagtggaggagggagctcca
gtcaactacattcaggtcacgcctcaggagaaggaagccatcgagaggttaaaagcgttg
ggtttccccgaggcgctggtgatccaggcctactttgcctgtgaaaagaacgagaaccta
gcggccaacttcctcctgaaccagggctttgaggatgaatga
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